BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922256
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31860.1 | Symbols: AT-IE, HISN2 | histidine biosynthesis bi... 1419 0.0
> AT1G31860.1 | Symbols: AT-IE, HISN2 | histidine biosynthesis
bifunctional protein (HISIE) | chr1:11434108-11436607 REVERSE
LENGTH=1065
Length=1065
Score = 1419 bits (768), Expect = 0.0
Identities = 843/880 (96%), Gaps = 2/880 (0%)
Strand=Plus/Plus
Query 1 TTTTCGTTTCTCATTGCGTTAACATGGCGGTATCGTACAATGCATTAGCACAGTCTTTAG 60
|||||||||||| | ||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 55 TTTTCGTTTCTCGTAGCGTTAAAATGGCGGTATCGTACAATGCATTAGCTCAGTCTTTAG 114
Query 61 CGAGAAGTAGCTGCTTCATCCCCAAGTCTTATTGCGTTAGAGATACTAAGCAGAGAAGCA 120
||||||||||||||||||||||||| |||||| | ||||||||||||||| ||||||||
Sbjct 115 CGAGAAGTAGCTGCTTCATCCCCAAACCTTATTCCTTTAGAGATACTAAGCTGAGAAGCA 174
Query 121 GATCCAATGTCGTATTTGCGT-CTAATGATAATAACAACATTGCTCTTCAAGCTAAGGTA 179
|||||||||||||||| |||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 175 GATCCAATGTCGTATTCGCGTGC-AATGATAATAAGAACATTGCTCTTCAAGCTAAGGTA 233
Query 180 GATAACTTATTGGACCGCATAAAATGGGATGACAAAGGATTAGCTGTGGCAATAGCACAA 239
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 234 GATAACTTGTTGGACCGCATTAAATGGGATGACAAAGGATTAGCTGTGGCAATAGCACAA 293
Query 240 AACGTTGATACTGGAGCAGTATTAATGCAAGGCTTTGTTAATAGGGAGGCTCTCTCCACA 299
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 294 AACGTTGATACGGGAGCAGTATTGATGCAAGGCTTTGTTAATAGGGAGGCCCTCTCCACA 353
Query 300 ACCATAAGTTCTCGGAAAGCTACATTCTTTAGTCGATCAAGATCAACCTTATGGACTAAA 359
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 354 ACCATCAGTTCTCGGAAAGCTACATTCTTTAGTCGATCAAGATCTACCTTATGGACTAAG 413
Query 360 GGAGAGACATCCAATAACTTCATCAATATTCTCGATGTGTATATTGATTGCGATCGTGAT 419
|||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 414 GGAGAGACATCCAATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGAT 473
Query 420 TCGATTATTTACCTTGGAACACCTGATGGACCTACCTGTCACACAGGGGAAGAGACTTGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TCGATTATTTACCTTGGAACACCTGATGGACCTACCTGTCACACAGGGGAAGAGACTTGT 533
Query 480 TACTACACATCGGTTTTTGATCAATTAAACAATGATGAGCCTTCAGGAAATAAGCTAGCA 539
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 534 TACTACACATCGGTTTTTGATCAATTAAACAATGATGAGGCTTCAGGAAACAAGCTAGCA 593
Query 540 TTAACAACATTGTACTCGCTAGAATCAATCATTTCCAAGCGGAAAGAAGAATCAACAGTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TTAACAACATTGTACTCGCTAGAATCAATCATTTCCAAGCGGAAAGAAGAATCAACAGTT 653
Query 600 CCTCAAGAAGGTAAACCGTCATGGACAAGACGGTTATTGACGGATGACGCTCTCCTTTGC 659
||||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 654 CCTCAAGAAGGTAAACCATCATGGACTCGACGGTTGTTGACGGATGACGCTCTGCTTTGC 713
Query 660 ACAAAGATCAGGGAAGAAGCTGACGAGTTATGCAGAACACTGGAGGATAATGAGGAAGTT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TCAAAGATCAGGGAAGAAGCTGACGAGTTATGCAGAACACTGGAGGATAATGAGGAAGTT 773
Query 720 TCAAGAACACCATCGGAGATGGCTGATGTGTTATACCACGCAATGGTGCTTCTATCTAAA 779
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 774 TCAAGAACACCATCAGAGATGGCTGATGTTTTATACCACGCAATGGTGCTTCTATCTAAA 833
Query 780 AGGGGTGTGAAGATGGAAGATGTTCTTGAAGTTCTTAGAAAACGCTTCTCTCAATCTGGA 839
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 834 AGGGGTGTGAAGATGGAAGATGTTCTTGAAGTTCTTAGGAAACGCTTCTCTCAATCTGGA 893
Query 840 ATCGAGGAGAAGCAAAACCGTACAAAGTAACTGTTTTCTT 879
||||||||||||||||||||||||||||||| |||||||
Sbjct 894 ATCGAGGAGAAGCAAAACCGTACAAAGTAACCATTTTCTT 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43452537155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5