BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922294
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33020.1 | Symbols: | F-box and associated interaction doma... 228 9e-59
AT5G42430.1 | Symbols: | F-box and associated interaction doma... 178 9e-44
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 165 7e-40
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 158 1e-37
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 111 9e-24
> AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11962746-11964832 FORWARD LENGTH=1647
Length=1647
Score = 228 bits (123), Expect = 9e-59
Identities = 528/706 (75%), Gaps = 98/706 (14%)
Strand=Plus/Plus
Query 46 CGTATGATATGTAACCCTATCACGGGTA-AGTATGCGACCTTACCTAAACTGAT---GGT 101
||| |||||||||||||||||||||| | | ||||||| |||| | ||||||| |
Sbjct 394 CGTGTGATATGTAACCCTATCACGGG-ACAATATGCGATCTTA-C--AACTGATAACATT 449
Query 102 GAAC-AG--GATTAACCTTTTT-GGATTTGATCCGATCGACAAGCAATTCAAAGTGTTG- 156
|| || || || |||||| || ||||||||||| |||||||||||||| || |||
Sbjct 450 CCACGAGAAGA-GAAGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGC 508
Query 157 GTAATGAACAATA-AAGTTTATAATGGAACGGGTATT-A--ATATTTTGACATTAGGAA- 211
| ||| | |||| || | || ||| | | | || | ||||| |||||||| |||
Sbjct 509 G-CATG-A-AATATAA--TGATCGTGGTATTGTTGTTCACCATATTCTGACATTA-GAAC 562
Query 212 CTGGAAAAATGAGGTGGAGGAAGATCCGTTGTCCCTTATCCCAT-AAGGTTTGTGGTGAA 270
|||| |||||||||||||| || ||||| ||||||||| ||||| || ||| ||| |||
Sbjct 563 CTGGCAAAATGAGGTGGAGAAAAATCCGATGTCCCTTAGCCCATGAACCTTTCTGG-GAA 621
Query 271 GGGATATGCGTCAATGGAGTTTGGTATTATTTAGCTTGCAAAATTGATGAAGAGTATTAT 330
| |||||||| |||||| |||| | || ||| ||| | | | || | |
Sbjct 622 GAGATATGCGCCAATGGGGTTT--T-GTA-TTA-CTT-----A--GCT---GA--ACCA- 663
Query 331 TATGTGATTGATGAAGAGTCTTATGTGATAGT-TTGCTTTGATGTTGGGTCTGAGAAATT 389
| ||| || | || ||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 664 -A-CTGA-TG--G-AGGGTCTTATGTGATA-TGTTGCTTTGATGTTCGGTCTGAGAAATT 716
Query 390 CAAGTTTATAGATGCAAAATGCATTGGGCGAGAT-ACTA--C-ATTGATTAACTATAAGG 445
||| ||||| || ||||||||| || || || | ||| | |||||| || |||||||
Sbjct 717 CAAATTTATTGACGCAAAATGC-TTTGGTGATTTCTCTATTCAATTGATCAATTATAAGG 775
Query 446 GTAAATTAGGTGGGATTGA-TTGG--GT-TGATA--G--G--GG-TA----ACCG-TGAG 489
||||| ||||||||||| | |||| || ||||| | | || | |||| ||||
Sbjct 776 GTAAACTAGGTGGGATT-AGTTGGAAGTATGATACCGTCGATGGAAAGCGTACCGTTGAG 834
Query 490 TTATGTATGTGGGTTCTAGAGGATGTCGAGAAACAGAAATGGTCGAAATATGTTTACACT 549
|| | ||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||
Sbjct 835 TTGTATATGTGGGTTCTAGAGGATGTCGAGAAACAGAAATGGTCCAAATACGTCTACCCT 894
Query 550 TTGCCGGAGGATGAAGTCCTAATTGAATTAGACAATTATTATGTTGTTGGAGTGACAGCT 609
||||||| ||| | ||||| || ||||| |||| ||||||||||||
Sbjct 895 TTGCCGG-GGA--AT-TCCTAC----------CA-TTATTCCGTTGCAGGAGTGACAGCT 939
Query 610 AGAGGTGA-AGTTGTTTT-GTCGAGGAAACGTACACGTG-AA-CCGTTTTATGttttttt 665
| |||||| | ||||||| ||| || | | ||||| | || |||||||||||||| |
Sbjct 940 AAAGGTGATA-TTGTTTTTGTCAAG-A--CTTACACATCTAAACCGTTTTATGTTTTCTA 995
Query 666 CTTCAATCCCGAAAGGAACACTCTCCAAAGGGTTGAAATCCAAGGT 711
| | |||||||||| ||| ||| ||||| | ||||||||||| |||
Sbjct 996 CGTAAATCCCGAAAAGAAAACTTTCCAACGCGTTGAAATCCATGGT 1041
> AT5G42430.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:16971312-16972499 REVERSE LENGTH=1188
Length=1188
Score = 178 bits (96), Expect = 9e-44
Identities = 524/714 (73%), Gaps = 96/714 (13%)
Strand=Plus/Plus
Query 116 TTTTTGGATTTGATCCGATCGACAAGCAATTCAAAGTGTTGGTAATGAA-CA-ATAAAGT 173
||||| | ||||||||| | | |||||||||||| || ||| | ||||| | |||||
Sbjct 444 TTTTTTG-TTTGATCCGGTTGGCAAGCAATTCAAGGTATTGCTCATGAATAAGATAAA-- 500
Query 174 TTATAATGGAAC---GGGTATTAATATTTTGACATTAGGAACTGGAAAAATGAGGTGGAG 230
|||||| ||| || ||| ||||||||||||| |||||| ||||| |||| |||||
Sbjct 501 CAATAATGAAACAAAGGACATTCATATTTTGACATTGGGAACTAGAAAAGTGAGATGGAG 560
Query 231 GAAGAT-C--CGTTGTCCCTT-ATCCCATAAGGTTTGTG-GTGAAGGGATATGCGTCAAT 285
|||||| | | || ||||| || ||||| |||| | |||| |||||||| |||||
Sbjct 561 GAAGATCCAACAATGCCCCTTGAT-CCATATTGTTT-CGCATGAATGGATATGCATCAAT 618
Query 286 GGAG-TTTGGTATTATTTAGCTTGCAAAATTGATGAAGAGTATTATTATGTGATTGATGA 344
|| | ||| |||||| |||||| || |||||| | | | | | ||| |
Sbjct 619 GGGGCTTT-GTATTACATAGCTTATAACATTGAT-----G----A-T-T-T-CTTG--G- 661
Query 345 AGAGTCTTATGTGATAGTTTGCTTTGATGTTGGGTCTGAGAAATTCAAGTTTATAGATGC 404
| | || | ||||||||||||||||| |||| ||||||||||| | | || || |
Sbjct 662 -G-G---TA--T-ATAGTTTGCTTTGATGTCAGGTCCGAGAAATTCAAATGTCTAAAT-C 712
Query 405 -AAA--ATG-C-ATTGGGC-G-A-GA--TACTACATTGATTA-ACTATAAGGGTAAATTA 453
||| | | | || | | | || ||||| ||||| || ||||||| |||||||||
Sbjct 713 TAAACCAAGACTGTTTTTCTGAACGATCTACTAAATTGA-TATACTATAAAGGTAAATTA 771
Query 454 GGTG-GGATTGA-TTG-GGT-TGAT-A-GG-GGT--A----ACCGTGAGTTATGTATGTG 500
|||| || || | ||| || || | | || ||| | || | |||||||||||||
Sbjct 772 GGTGTGG-TTAATTTGAAGTATGCTCATGGCGGTGGATTTCCCCTTAAGTTATGTATGTG 830
Query 501 GGTTCTAGAGGATGTCGAGAAACAGAAATGGTCGAA-ATATGTTTACACTTTGCCGGAGG 559
||||||||||||||| ||||||||| ||||| | || || ||| ||||||||| ||| |
Sbjct 831 GGTTCTAGAGGATGTGGAGAAACAGGAATGGAC-AACATCTGTGTACACTTTGAGGGATG 889
Query 560 ATGA-AG--TCCT-AATTGAATTAG-ACAAT-TATTATGTTGTTGG-AGTGACAGCTAGA 612
| || || || | || | ||| || || | || | ||||||| | | || |||| |
Sbjct 890 AGGATAGAGTCGTTAAG-GT-TTACTACGATCTTTT-TATTGTTGGGA-TAACTGCTACA 945
Query 613 GGTGAAGTTGTTTTGTCGAGGAAAC-G-TACACGTGAA-CCGTTTTATGtttttttCTTC 669
|||||| |||||||| ||| |||| | || || || ||||||||||| || | |||
Sbjct 946 GGTGAAATTGTTTTGGCGAAGAAAAAGGTAT--GT-AAGCCGTTTTATGTCTTCTACTTT 1002
Query 670 AATCCCGAAAGGAACACTCTCCAAAGGGTTGAAATCCAAGGTTTGGGAGG-TGACCGAAG 728
|||| ||||||||||||||||| ||| ||||||||||||||||| |||| | ||| |||
Sbjct 1003 AATCTCGAAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTTTTGGAGAAT-ACCAAAG 1061
Query 729 ACGGTTTGATA-T-TT-ACACCTTTGTAGATCATGTAGAAGATCTTAC-GTTTA 778
| ||| | || | || || |||||||||| |||||||| ||||||| |||||
Sbjct 1062 -CTGTT-G-TAGTGTTCACGCCTTTGTAGACCATGTAGAGGATCTTAATGTTTA 1112
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 165 bits (89), Expect = 7e-40
Identities = 364/488 (75%), Gaps = 54/488 (11%)
Strand=Plus/Plus
Query 358 ATAGTTTGCTTTGATGTTGGGTCTGAGAAATTCAAG--TTTATA--GATG--CAAAATGC 411
|||| ||||||||||||| ||||||||||||||||| |||||| | | || | |||
Sbjct 457 ATAGGTTGCTTTGATGTTAGGTCTGAGAAATTCAAGTTTTTATATCTAAGCCCAGATTGC 516
Query 412 ATT--GGGC-GAG-ATACTACATTGATTAACTATAAGGGTAAATTAGGTGGGA-T-TGAT 465
|| | | | || | |||||| |||||||||||||||||||||| || | | |
Sbjct 517 TTTCCAAACTG-GTCTAGAAAATTGATAAACTATAAGGGTAAATTAGGTGTGACTAT-AA 574
Query 466 TGG--G-TTGAT-A-GG-GG---TAACCGTGAGTTATGTATGTGGGTTCTAGAGGATGTC 516
||| | || || | || || | || | |||| |||||||||||||||||||||||
Sbjct 575 TGGAAGATT-ATCATGGTGGATTTCCCCTTAAGTTGCGTATGTGGGTTCTAGAGGATGTC 633
Query 517 GAGAAACAGAAATGGTCGAAATATGTTTACACTTTG---CCGGAGGATGAAGTCCTAATT 573
|||||| || ||||| ||| ||||| ||||||||| || ||| || ||||| |
Sbjct 634 GAGAAAGAGGAATGGACGAGATATGCCTACACTTTGAGGCCTGAGAATAAAGTCG-AGGA 692
Query 574 GAATTAGACAAT-TATTATGTTGTTGGAGTGACAGCTAGAGGTGAAGTTGTTTTGTCGAG 632
||| ||| || ||| |||||||||| | || ||| ||||||| |||||||| |||
Sbjct 693 CAAT--GACTATGTAT-ATGTTGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGACGAA 749
Query 633 G-A-AACGTACACGTGAACCGTTTTATGtttttttCTTCAATCCCGAAAGGAACACTCTC 690
| || | | | | |||||||||||||||| | ||| | ||| |||||||||||||||
Sbjct 750 ACAGAATGCATA--TAAACCGTTTTATGTTTTCTACTTTAGTCCTGAAAGGAACACTCTC 807
Query 691 CAAAGGGTTGAAATCCAAGGT-TTGGGAGGTGACCGAAGACGGTTTGAT-AT--T-T--A 743
| ||| ||||||||||||||| |||| || | ||| ||||| || || | | |
Sbjct 808 CTAAGCGTTGAAATCCAAGGTGTTGG-AGA--A--GAAT--GGTTTTATCATAATGTTTA 860
Query 744 C-ACCTTTGTAGATCATGTAGAAGATCTTACGTTTAATGCTATGAAGACAGA-ATATGGT 801
| || |||||||| ||||| || ||||||| |||| ||| |||||||||| | ||||| |
Sbjct 861 CTAC-TTTGTAGACCATGTCGAGGATCTTAGGTTTGATGTTATGAAGACA-ACATATGCT 918
Query 802 GCAACATC 809
| ||||||
Sbjct 919 GGAACATC 926
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 158 bits (85), Expect = 1e-37
Identities = 278/363 (77%), Gaps = 46/363 (13%)
Strand=Plus/Plus
Query 356 TGATAGTTTGC-TTTGATGTTGGGTCTGAGAAATTCAAGTTTAT-AGATGCA--AA--AT 409
||||||||| | |||||| || |||||||||||||||| ||||| | ||||| || |
Sbjct 77 TGATAGTTT-CTTTTGATTTTAGGTCTGAGAAATTCAATTTTATCA-ATGCATCAAGCTT 134
Query 410 GCATTGGGCGAGATACTACATTGATTAACTATAAGGGTAAATTAGGTGGGATTGA-TTGG 468
| || | | ||| | |||||| ||||| || |||||||||||||||||||| ||||
Sbjct 135 CCTTTTTTC-ATCTACAAAATTGATAAACTACAAAGGTAAATTAGGTGGGATTGATTTGG 193
Query 469 -GT-TGAT-A--G-GG-GTA-A--CCG-TGAGTTATGTATGTGGGTTCTAGAGGATGTCG 517
|| | || | | || ||| | ||| ||||||| ||||||||||||||||||||||||
Sbjct 194 CGTATAATCATGGTGGTGTATATCCCGTTGAGTTACGTATGTGGGTTCTAGAGGATGTCG 253
Query 518 AGAAACA-GAAATGGTCGAAATATGTTTACACTTTGCCGGAGG--AT-GAAGTCCTA--A 571
||||||| ||| ||||||| | |||||||| ||||||||||| || ||| | | | |
Sbjct 254 AGAAACACGAA-TGGTCGAGACATGTTTACTCTTTGCCGGAGACCATTGAATTTC-AGCA 311
Query 572 TTG-AATTAGACAATTATTATG--TTGTTGG-AGTGACA-GCTAGAGGTGAAGTTGTTTT 626
|| || || |||| ||| || ||| ||| | ||| | |||| ||||||| |||||||
Sbjct 312 GTGTAACTA--CAAT-ATT-TGCGTTGGTGGGA-TGA-ATGCTATAGGTGAAATTGTTTT 365
Query 627 GTCG-AGGAA-ACGTA-C-ACGTG-AA-CCGTTTTATGtttttttCTTCAATCCCGAAAG 680
||| || | | || | || | || |||||||||||||| | ||||||||||||||
Sbjct 366 TTCGGAGTCATATATATCTACATCCAAACCGTTTTATGTTTTCTACTTCAATCCCGAAAA 425
Query 681 GAA 683
|||
Sbjct 426 GAA 428
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 111 bits (60), Expect = 9e-24
Identities = 226/302 (75%), Gaps = 27/302 (9%)
Strand=Plus/Plus
Query 486 TGAGTTATGTATGTGGGTTCTAGAGGATGTCGAGAAACAGAAATGGTCGAAATATGTTTA 545
|||||| || ||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 1051 TGAGTTGCGTGTGTGGGTTCTAGAGGATGTTAAGAAACAGCAATGGTCGAAATATGCCTA 1110
Query 546 CACTTTG-CCGGAGGATGAAGTCCTAATTGAATTAGACAAT-TATTATGTTGTTGGAGTG 603
||||| | || || ||| || | || | | | | | || | | ||||| |
Sbjct 1111 CACTTGGACC-GATGAT--AG--ATTCTT-CCGTCGTC-GTGT-TTCCATCGCTGGAGGG 1162
Query 604 ACAGC-TAGAGGTGAAGTTGT-TTTGTCGA-G--GAAACGTACACGT--G-AACCGTTTT 655
|| || | | |||||| | || ||| |||| | ||| ||||| | | |||||||||
Sbjct 1163 ACTGCTTCG-GGTGAAATAGTGTTT-TCGATGCTCAAATATACACCTAAGCAACCGTTTT 1220
Query 656 ATGtttttttCTTCAATCCCGAAAGGAACACTCTCCAAAGGGTTGAAATCCAAGGTTT-G 714
||||||| | |||||||||||||||||||||||||||| | ||||||||||||||||| |
Sbjct 1221 ATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCAAGGTTTTG 1280
Query 715 G-GAGGTG--ACCGAAGACG-GTTTGATATTTACACCTTTGTAGATCATGTAGAAGATCT 770
| || ||| | ||| || || || ||| |||||||||| | || ||||| |||||
Sbjct 1281 GTGAAGTGTTAAAGAAAACTTGTA-GAG-TTTGCACCTTTGTAAACCACGTAGAGGATCT 1338
Query 771 TA 772
||
Sbjct 1339 TA 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45863776211
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5