BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922295
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30935.1 | Symbols: | pseudogene, F-box protein family, con... 152 5e-36
AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9... 124 1e-27
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 117 2e-25
AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-84... 102 6e-21
AT1G30940.1 | Symbols: | pseudogene, F-box protein -related, c... 91.6 1e-17
> AT1G30935.1 | Symbols: | pseudogene, F-box protein family, contains
F-box domain Pfam:PF00646 | chr1:11017436-11018990 REVERSE
LENGTH=1555
Length=1555
Score = 152 bits (82), Expect = 5e-36
Identities = 278/366 (76%), Gaps = 40/366 (11%)
Strand=Plus/Plus
Query 199 ATTGATATTTTGACATTAGAAAGTGGAAAAATGAGGTGGAGGAAGATCTGTTGTCCCTTA 258
||| ||||||||||||| | || |||| || ||| ||||||||||||| ||||| ||
Sbjct 530 ATT-ATATTTTGACATTGGGAACTGGAGAATTGAAGTGGAGGAAGATCCAATGTCCTTTT 588
Query 259 ACCCACGAG-GTTTGTTTTGA-ACGGATATGCATCAATGGAGTTTTGTATTACT-TAGGT 315
|| || ||| ||| || || | |||||||||| ||||| ||||||||||||| | | |
Sbjct 589 ACACATGAGCCTTT-TTGGGAGA-GGATATGCATTAATGGGGTTTTGTATTACTCT-GCT 645
Query 316 TACAAAACTGA-T-GAA--G-A-GTCTTATGTGGTAGCTTGCTTTGATGTTAGGTATGAG 369
||| | |||| | || | | |||| || | ||||||||||||||||||||| ||||
Sbjct 646 TACTATTCTGATTCTAATGGAAGGTCTCATCTCATAGCTTGCTTTGATGTTAGGTCTGAG 705
Query 370 GAATTCAAGTTT-ATAGATGCAAAATGCATTGGGCGAGAGACT-AGATTGATTAACTATA 427
||||||| ||| |||| ||||| || | || | || | || ||||| |||||||
Sbjct 706 AAATTCAA-TTTCATAGCCACAAAA--CA-TCGG-TA-CGA-TCAG-TTGATAAACTATA 757
Query 428 AGGGTAAATTAGGTGGGATTGA-TTGG-G--T-CAAAGG-A----GGT--A--ACC-G-T 471
|||| |||||| |||||||| | |||| | | | ||| | ||| | || | |
Sbjct 758 AGGGGAAATTATGTGGGATTAATTTGGAGTATGC-TAGGCATGTTGGTGGATTTCCTGTT 816
Query 472 GAGTTGTGTATGTGGGTTTTAGAGGATGTCGAGAAACAAGAATGGTCGAAATATGTTTAC 531
||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 817 AAGTTGAGTATGTGGGTTTTAGAGGATGTCGAGAAACCGGAATGGTCGAAACATGTCTAC 876
Query 532 ACTTTG 537
|||||
Sbjct 877 TCTTTG 882
> AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9863744
FORWARD LENGTH=1275
Length=1275
Score = 124 bits (67), Expect = 1e-27
Identities = 106/123 (86%), Gaps = 10/123 (8%)
Strand=Plus/Plus
Query 646 TTTTATGTTTTCTTCTTCAATCCCGAAAAGAACACTCTCCAACGTGTTGAAATCCAAGGT 705
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1048 TTTTATGTTTTCTACTTCAATCCCGAAAAGAGCACTCTCCAACGTGTTGAAATCCAAGGT 1107
Query 706 TTTGAAGATGAGGGAAGAGAGATT-TAT-GTTTACACCTTTGTAGACTATGTAGAAGATC 763
|||| | ||| | | | | || || |||||||||||||||||| | ||||||||||
Sbjct 1108 TTTG--G-TGA---A-G-GCGTTTGTAGCGTTTACACCTTTGTAGACGACGTAGAAGATC 1159
Query 764 TTA 766
|||
Sbjct 1160 TTA 1162
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 117 bits (63), Expect = 2e-25
Identities = 106/126 (84%), Gaps = 5/126 (4%)
Strand=Plus/Plus
Query 645 GTTTTATGTTTTCTTCTTCAATCCCGAAAAGAACACTCTCCAACGTGTTGAAATCCAAGG 704
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1216 GTTTTATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCAAGG 1275
Query 705 TTTTGAAGATGAGGGAAGAGAGA--TT-TAT-GTTTACACCTTTGTAGACTATGTAGAAG 760
||||| || | | || ||| | || || |||| |||||||||| || | ||||| |
Sbjct 1276 TTTTGGTGAAGTGTTAA-AGAAAACTTGTAGAGTTTGCACCTTTGTAAACCACGTAGAGG 1334
Query 761 ATCTTA 766
||||||
Sbjct 1335 ATCTTA 1340
Score = 69.4 bits (37), Expect = 6e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 276 TGAACGGATATGCATCAATGGAGTTTTGTATTACTTAGGT 315
|||| |||||||||||||||||||||||||||||||||||
Sbjct 775 TGAAGGGATATGCATCAATGGAGTTTTGTATTACTTAGGT 814
> AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-846616
REVERSE LENGTH=1596
Length=1596
Score = 102 bits (55), Expect = 6e-21
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 646 TTTTATGTTTTCTTCTTCAATCCCGAAAAGAACACTCTCCAACGTGTTGAAATCCAAGGT 705
||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1426 TTTTATGTTTTCTACTTCAATCCCGAAAGGAATACTCTCCAACGTGTTGAAATCCAAGGT 1485
Query 706 TTTG 709
||||
Sbjct 1486 TTTG 1489
> AT1G30940.1 | Symbols: | pseudogene, F-box protein -related,
contains TIGRfam:TIGR01640 F-box protein interaction domain
| chr1:11021984-11023320 REVERSE LENGTH=1337
Length=1337
Score = 91.6 bits (49), Expect = 1e-17
Identities = 390/544 (72%), Gaps = 66/544 (12%)
Strand=Plus/Plus
Query 175 AATATAGTTTGTAATGGAAC--GCTTATTGATATTTTGACATTAGAAAGTGGAAAAATGA 232
||||||| ||| || ||| | | | ||| ||||| ||||||| | || ||| || |||
Sbjct 493 AATATAGCTTGGAA-GGATCTAGATCATT-ATATTCTGACATTGGGAACTGGGGAATTGA 550
Query 233 GGTGGAGGAAGATCTGTTGTCCCTTAACCCACGAGGTTTGT-TTTGAACGGATATGCATC 291
||||||| |||| | ||| | || ||||| || | ||| | ||| |||| || |||
Sbjct 551 AATGGAGGAGGATCCGATGTGCTTTTACCCATGA-GCCTGTGTGGGAAAGGATTTGTATC 609
Query 292 AATGGAGTTTTGTATTACTTAGGTTA-CAAAACTGAT-GAAGAGTCTTATGTGGTAGCTT 349
||||||||||||||||||| | | || || ||||| ||| | ||||||| ||| ||
Sbjct 610 AATGGAGTTTTGTATTACTCA-GCTATGAATTCTGATGGAA-A---TTATGTGATAGTTT 664
Query 350 GCTTTGATGTTAGGTATGAGGAATTCAAGTTTATAGATGCAAAATG-CATTGGGCGAGA- 407
| ||||||| | ||| |||||| | | || ||| |||| | || | |||
Sbjct 665 GTTTTGATG-T---TAT------TTCAAGCTCGTTGACGCAGAATGCCGTT---CTAGAT 711
Query 408 -GACTAGATTGATTAACTATAAGGGTAAATTAGGTGGG---A--TT-GA-T-TG--GGTC 456
| | ||||||| ||||||||||| |||||| ||||| | || || | || |||
Sbjct 712 TTAATGGATTGATAAACTATAAGGGGAAATTATGTGGGATTATTTTGGAGTATGCTAGTC 771
Query 457 A--AAGGAGG-T-AACCG-TGAGTTGTGTATGTGGGTTTTAGAGGATGTCGAGAAACAAG 511
| | || || | |||| | ||||| |||||||||||||||||||||||||||||| |
Sbjct 772 ATGATGGTGGATCTACCGTTAAGTTGAGTATGTGGGTTTTAGAGGATGTCGAGAAACCGG 831
Query 512 AATGGTCGAAATATGTTTACAC-TT-TGC-CAGAGAATGAAGTCCT-AATTGATTTAT-A 566
||||||||||| |||| ||| | || || | |||| | ||||| | || | || | |
Sbjct 832 AATGGTCGAAACATGTCTACTCGTTGTGGACGGAGAGTCAAGTCGTTAAG-G-TTAACCA 889
Query 567 CAAG-TATAATGTTGCTGG-AGTGACGGCTAGAGGTGA-AGTTGTTTTGTCGAGGAAATT 623
|| | | |||| |||| | |||| |||| ||||| | |||||||||||| ||||
Sbjct 890 TAATCTTTC-TGTTTCTGGGA-TGACTGCTACCGGTGACA-TTGTTTTGTCGACAAAATA 946
Query 624 TGCAGATATGTGGTCGTCACAGTTTTATGTTTTCTTCTTCAATCCCGAAAAGAACACTCT 683
|||| | | | | | |||||||||||||| ||||||||| |||| ||| |||||
Sbjct 947 TGCA--TCTCAG--C--C---GTTTTATGTTTTCTACTTCAATCCAGAAAGGAAAACTCT 997
Query 684 CCAA 687
|||
Sbjct 998 GCAA 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5