BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922296
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-1101... 215 9e-55
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 163 3e-39
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 110 4e-23
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 110 4e-23
AT1G30930.1 | Symbols: | F-box family protein | chr1:11014783-... 104 2e-21
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 80.5 3e-14
AT2G16450.1 | Symbols: | F-box and associated interaction doma... 58.4 2e-07
AT1G30940.1 | Symbols: | pseudogene, F-box protein -related, c... 58.4 2e-07
> AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-11011792
REVERSE LENGTH=1125
Length=1125
Score = 215 bits (116), Expect = 9e-55
Identities = 425/563 (75%), Gaps = 66/563 (12%)
Strand=Plus/Plus
Query 244 ATGATCACT-ATATTTTGACATTAGGAACTGGAAAAATGAGGTGGAGGAAGATCCAATGT 302
||||||| | | ||| |||| || |||||| ||| |||||||||||| |||||||| ||
Sbjct 23 ATGATCA-TAAAATTCTGACCTTGGGAACTAGAAGAATGAGGTGGAGAAAGATCCATTGC 81
Query 303 CCCTTAATC-CATGGT--TTTAGTTGTGAAGGGATATGCATCAATGGGGTTTTGTATTAC 359
||||||| | |||| | ||| |||||||||||||||||||||||||||||| ||||||
Sbjct 82 CCCTTAA-CTCATGATCCTTT--TTGTGAAGGGATATGCATCAATGGGGTTTTATATTAC 138
Query 360 TTAGCT-TACAAATTTGATATAACGTCT-GATGATA--AAAC-TCACTTGC--TAGTTTG 412
|||||| | |||||| ||| ||| || | | | | ||| || ||| |||||||
Sbjct 139 TTAGCTATCCAAATT-GATG-AACC-CTTGGTTA-ACCAAAGGTCTTTTGTGATAGTTTG 194
Query 413 CTTTGATGTTAGGTCTGAAAAAGTCAAGTTTGTTGATGCAAACTGCGTTTTTGATGATTG 472
|||||||||||| | ||||||| ||| ||| |||| | | | ||| |||| ||
Sbjct 195 CTTTGATGTTAGATTTGAAAAATTCACGTTCATTGACGTAGATTGC-TTTT--AT----- 246
Query 473 GTCTACTACATTGATAAACTATAAGGGTAAATTCGGTGTTATTAATTGGAAGTATGATGA 532
| | | |||||||| |||||||| ||||| |||| ||| ||||||| ||| | |
Sbjct 247 --C-A-T---TTGATAAATTATAAGGGAAAATTAGGTGGGATTGATTGGAAACATGGTAA 299
Query 533 TGCT--T--A--T-G--CCATTGAGTTGAGTATGTGGGTTCTAGAGGATG---AGAAACA 580
||| | | | | || |||||||||||||||||||||| ||||||| |||||||
Sbjct 300 CGCTAATGGAAGTCGTACCTTTGAGTTGAGTATGTGGGTTCTTGAGGATGTCGAGAAACA 359
Query 581 TGAATGGTCAAAATATGTCTACACTTTTCCGGAGATTAATAAAGCCCATGATCT-CGACC 639
||||||||| ||||| | || |||||||| ||| | | | ||| | ||| ||| | |
Sbjct 360 TGAATGGTCGAAATACGACTGCACTTTTCTTGAG-T-A-TGAAGTC-ATGTTCTACAATA 415
Query 640 TTAGACTTGA--T-GG-AGTGACTGCTGCAGGTGAAATTGTATTT-TCAAGGTGGAAATC 694
|| |||| | || | |||||||| || |||||||||| ||| || || | || |
Sbjct 416 TTTCTCTTGCCGTTGGGA-TGACTGCTACATGTGAAATTGT-TTTGTC--GGAG-AAGTT 470
Query 695 TACATGTAAACCGTTTTATGTTTTATACTACAATCCCGGAAG-GAACACTCTCCAAA-AC 752
| ||| |||| |||||||||| || |||| |||||||| ||| ||| |||||||||| |
Sbjct 471 TGCATCTAAATCGTTTTATGTCTTCTACTTCAATCCCGAAAGAGAA-ACTCTCCAAAGA- 528
Query 753 GTTGAAATCCAAGGTTTTGGAGA 775
|||||||||||||| || |||||
Sbjct 529 GTTGAAATCCAAGGATT-GGAGA 550
Score = 145 bits (78), Expect = 1e-33
Identities = 245/320 (77%), Gaps = 33/320 (10%)
Strand=Plus/Plus
Query 474 TCTACTACATTGATAAACTATAAGGGTAAATTCGGTGTTATTAATTGGAAGTATG---AT 530
|||||||||||||||||||||||||||||| | ||||| ||||||| || | ||| ||
Sbjct 739 TCTACTACATTGATAAACTATAAGGGTAAAGTAGGTGTGATTAATTTGACGCATGCCTAT 798
Query 531 GAT-GCT-TATG-CCA-TTGAGTTGA-GTATGTGGGTTCTAGAGGAT---GAGAAACATG 582
|| | | ||| || || |||| | ||||| ||||||||||||| |||||||| |
Sbjct 799 GAACG-TGTATTTCCCCTTCAGTT-ACGTATGACGGTTCTAGAGGATTTTGAGAAACAGG 856
Query 583 AATGGTCAAAATATGTCTACACTTTTCCGGA-GATTAATAAAGCCCAT--G-ATCTCGAC 638
||||||| | ||||||||||||||| || || |||| || | | | || | |
Sbjct 857 AATGGTCGACATATGTCTACACTTTGATGGCTGAG-AATATAGTCGTTAAGTATGTTT-C 914
Query 639 CTTAGACTTGATGGAGTGACTGCTGCAGGTGAAATTGTATTTTCAAGGTGGAAATCTA-- 696
| | | ||| ||| |||||||| ||||||| ||||| ||| |||| ||| | |
Sbjct 915 CGTGG--TTG--GGA-TGACTGCTACAGGTGATATTGT-TTT----GGTGAAAA-CAAAT 963
Query 697 -CATGTAAACCGTTTTATGTTTTATACTACAATCCCGGAAGGAACACTCTCCAAAACGTT 755
|||| |||||||||||||| || |||| |||||||||||||||||||||| || |||
Sbjct 964 GCATGCAAACCGTTTTATGTGTTCTACTTTAATCCCGGAAGGAACACTCTCCTAAGTGTT 1023
Query 756 GAAATCCAAGGTTTTGGAGA 775
|||||||||||| |||||||
Sbjct 1024 GAAATCCAAGGTGTTGGAGA 1043
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 163 bits (88), Expect = 3e-39
Identities = 411/555 (74%), Gaps = 70/555 (13%)
Strand=Plus/Plus
Query 253 ATATTTTGACATTAGGAACTGGAAAA-ATGAGGTGGAGGAAGATCCA-ATGTCCCTTAAT 310
||||| |||||||||||||| ||||| ||||||||||| |||| | ||||||||| |
Sbjct 320 ATATTCTGACATTAGGAACT-GAAAATGTGAGGTGGAGGGAGAT-TATATGTCCCTT-TT 376
Query 311 C-CATGGTTTTAGTTGTG--AAG-GGATATGCATCAATGGGGTTTTGTATTACTTAGCTT 366
| ||| | | | | | ||| |||||||||||||||||||||||||||| | |
Sbjct 377 CATATGATCCTCCTCGGGAAAAGCCGATATGCATCAATGGGGTTTTGTATTAC--A--T- 431
Query 367 ACAAATTT-GATATAACGTCTGATGATAAAACTCACTTGCTAGTTTGCTTTGATGTTAGG 425
| | | | | || || | || || |||||| ||| ||||||||||||||||
Sbjct 432 A-AG-TGTCGGTA----GT-T-ATTAT-----TCACTTA-TAGGTTGCTTTGATGTTAGG 477
Query 426 TCTGAAAAAGTCAAGTTTGT-TGATGCAAA-CTGC-G-TT--TTTG-ATGATTGGTCTAC 478
||||| ||| |||||||| | | || | || | | | || ||| | | |||||||
Sbjct 478 TCTGAGAAATTCAAGTTTTTAT-AT-CTAAGCC-CAGATTGCTTTCCAA-ACTGGTCTAG 533
Query 479 TACATTGATAAACTATAAGGGTAAATTCGGTGTTA-T-TAATTGGAAG-T-ATGATGATG 534
| |||||||||||||||||||||||| ||||| | | |||| ||||| | || ||| ||
Sbjct 534 AAAATTGATAAACTATAAGGGTAAATTAGGTGTGACTATAAT-GGAAGATTATCATGGTG 592
Query 535 C-TTATGCCATTGAGTTGAGTATGTGGGTTCTAGAGGATG---AGAAACATGAATGGTCA 590
|| | || || ||||| ||||||||||||||||||||| ||||| | |||||| |
Sbjct 593 GATT-TCCCCTTAAGTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACG 651
Query 591 AAATATGTCTACACTTTT---CCGGAGATTAATAAAGCCCATGATC--TCGACC-T-TAG 643
| ||||| ||||||||| || |||| | ||||| | | || | | ||| | ||
Sbjct 652 AGATATGCCTACACTTTGAGGCCTGAGA--A-TAAAGTCGAGGA-CAAT-GACTATGTAT 706
Query 644 AC-TTGATGGAGTGACTGCTGCAGGTGAAATTGTATTTT-C-AAGGTGGAAATCTACATG 700
| ||| ||| | |||||| ||||||||||||| ||| | || | || | |||
Sbjct 707 ATGTTGTTGGGGCAACTGCTTCAGGTGAAATTGT-TTTGACGAAACAG-AA-TG--CATA 761
Query 701 TAAACCGTTTTATGTTTTATACTACAATCCCGGAAGGAACACTCTCCAAAACGTTGAAAT 760
|||||||||||||||||| |||| | ||| | |||||||||||||| || |||||||||
Sbjct 762 TAAACCGTTTTATGTTTTCTACTTTAGTCCTGAAAGGAACACTCTCCTAAGCGTTGAAAT 821
Query 761 CCAAGGTTTTGGAGA 775
||||||| |||||||
Sbjct 822 CCAAGGTGTTGGAGA 836
> AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444
REVERSE LENGTH=1203
Length=1203
Score = 110 bits (59), Expect = 4e-23
Identities = 297/403 (74%), Gaps = 51/403 (13%)
Strand=Plus/Plus
Query 246 GATCACT-ATATT-TTGACATTAGGAACTGGAAA-A-ATGAGGTGGAGGAAGATCCAATG 301
||||| | ||||| || ||||||||| || |||| | || ||||||||||||||||||
Sbjct 550 GATCA-TCATATTCTT-ACATTAGGAGCT-GAAACAGTTG-GGTGGAGGAAGATCCAATC 605
Query 302 TCCCTTAATCCATGGTT--T--TAGT--TGTGAAGGGATATGCATCAATGGGGTTTTGTA 355
||||||| | || || | |||| || ||| || |||||||||||| |||||||
Sbjct 606 TCCCTTACGCTAT-CTTCCTCATAGTAATG-GAA-CAATTTGCATCAATGGGATTTTGTA 662
Query 356 TTACTTAGCTTACAAATTTGATATAACGTCTGAT-GATAAAACTCACT-TGCTAGTTTGC 413
|||| |||| || ||| || | || | | | || ||||||| | | |||||||||||
Sbjct 663 TTACCTAGC-TA-AAA-TT-A-ATTATG-C-AATGGATAAAA---A-TGTGCTAGTTTGC 711
Query 414 TTTGATGTTAGGTCTGAAAAAGTCAAGTTTGTT-GATGCA-AACTGCGTTTTTGATGATT 471
||||||||||||||||| || | |||| | | | | ||| | | | | | ||
Sbjct 712 TTTGATGTTAGGTCTGAGAATTTTGTGTTTCTACG-T-CTTAACA-CATACT-GCTC-TT 766
Query 472 GGTCTACTACATTGATAAACTATAAGGGTAAATTCGGTGTTATTAATTG-GA--A-GT-- 525
|||||| |||| ||||||||||||||||||| || | |||||| || | ||
Sbjct 767 ---CTACTAAATTGGTAAACTATAAGGGTAAATTAGGCATGATTAATCAAGAGTATGTTG 823
Query 526 ATGATGATGCTTATGCCATTGAGTTGAGTATGTGGGTTCTAGAGGATGA-G-AAAC-ATG 582
|||||| || || | || | |||| ||| |||||||||||||||||| | ||| | |
Sbjct 824 ATGATGGTGGTTTTCCCCTAAAGTTAAGTGTGTGGGTTCTAGAGGATGTCGGAAAAGAAG 883
Query 583 AATGGTCAAAATATGTCTACACTTTTCCGGA-GATTAATAAAG 624
||||||| | ||||||||||||||| ||| ||| |||||||
Sbjct 884 AATGGTCGACATATGTCTACACTTTGAGGGATGAT-AATAAAG 925
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 110 bits (59), Expect = 4e-23
Identities = 268/362 (74%), Gaps = 41/362 (11%)
Strand=Plus/Plus
Query 406 TAGTTTGCTTT-GATGTTAGGTCTGAAAAAGTCAAGTTTGTTGATGCA--AA-CTGCGTT 461
|||||| |||| ||| |||||||||| ||| |||| ||| | ||||| || || | ||
Sbjct 80 TAGTTT-CTTTTGATTTTAGGTCTGAGAAATTCAATTTTATCAATGCATCAAGCTTCCTT 138
Query 462 TTTGATGATTGGTCTACTACATTGATAAACTATAAGGGTAAATTCGGTGTTATTAATT-G 520
||| | || |||| | |||||||||||| || |||||||| |||| ||| ||| |
Sbjct 139 TTT--TCAT----CTACAAAATTGATAAACTACAAAGGTAAATTAGGTGGGATTGATTTG 192
Query 521 G---A-AGT-ATGATGATGCT-TATGCCATTGAGTTGA-GTATGTGGGTTCTAGAGGATG 573
| | | | ||| || || | ||| || ||||||| | |||||||||||||||||||||
Sbjct 193 GCGTATAATCATGGTGGTG-TATATCCCGTTGAGTT-ACGTATGTGGGTTCTAGAGGATG 250
Query 574 ---AGAAACATGAATGGTCAAAATATGTCTACACTTTTCCGGAGA---TT-AATAA-AGC 625
||||||| |||||||| | | |||| ||| |||| ||||||| || ||| |||
Sbjct 251 TCGAGAAACACGAATGGTCGAGACATGTTTACTCTTTGCCGGAGACCATTGAATTTCAGC 310
Query 626 CCATG-ATCT-CGACCTTAGAC-TTGATGG-AGTGACTGCTGCAGGTGAAATTGTATTTT 681
|| | || | | || | | ||| ||| | ||| |||| |||||||||||| ||||
Sbjct 311 AG-TGTAACTACAATATTTG-CGTTGGTGGGA-TGAATGCTATAGGTGAAATTGTTTTTT 367
Query 682 CA-AGGTGG-A-A-ATCTACATGTAAACCGTTTTATGTTTTATACTACAATCCCGGAAGG 737
| || | | | |||||||| ||||||||||||||||| |||| |||||||| || |
Sbjct 368 CGGAG-TCATATATATCTACATCCAAACCGTTTTATGTTTTCTACTTCAATCCCGAAAAG 426
Query 738 AA 739
||
Sbjct 427 AA 428
> AT1G30930.1 | Symbols: | F-box family protein | chr1:11014783-11015913
REVERSE LENGTH=1131
Length=1131
Score = 104 bits (56), Expect = 2e-21
Identities = 460/638 (72%), Gaps = 95/638 (15%)
Strand=Plus/Plus
Query 246 GATCACTATATTTTGACATTAG-GAACTGGAAAAATGAGGTGGAGGA-AGATCCAATGTC 303
||||| |||||| ||||||| | ||||||| || ||| ||||||| | ||||||||||
Sbjct 523 GATCATTATATTCTGACATT-GAGAACTGGGGAATTGAAATGGAGGACA-ATCCAATGTC 580
Query 304 CCTTAATCCATG-G-TTTTAGTTGTGA-AGGGATATGCATCAATGGGGTTTTGTATTACT 360
| || | ||||| | ||| | || || | |||| || |||||||| |||||||||||||
Sbjct 581 CTTTTACCCATGAGCCTTT-G-TG-GACAAGGATTTGTATCAATGGAGTTTTGTATTACT 637
Query 361 TAGCTTACAAATTTGATATAACGTCTGATGATAAAACTCACT-TGCTAGTTTGCTTTGAT 419
||| | | ||| || ||||||| ||| | | | || ||||||| ||||||
Sbjct 638 CAGC-T----A--TGA-AT----TCTGATG--GAAA-TTA-TGTGATAGTTTGTTTTGAT 681
Query 420 GTTAGGTCTGAAAAAGTCAAGTTTGTTGATGCAAACTG-CGTTTTTGATGATTGGTCTAC 478
||||| | ||| ||| | ||| | ||||| |||| || || || ||| | | | ||
Sbjct 682 GTTAGATATGAGAAATTTAAGCTCGTTGACACAAAATGTCG-TTCTGA--A-T--T-TAA 734
Query 479 TACATTGATAAACTATAAGGGTAAATTCGGTGTTATTAA-TTGGAAGTATGATGAT-G-C 535
| |||||||||||||||||| ||||| ||| |||| || |||||||| | || |
Sbjct 735 TGGATTGATAAACTATAAGGGGAAATTATGTGGGGTTAAGTT-GAAGTATGCTTATCGTG 793
Query 536 TT--A--TGCCATTGAGTTGA-GTATGTGGGTTCTAGAGGA---TGAGAAACATGAATGG 587
|| | | || || |||| | ||||| | ||||||||||| ||||||| ||||||||
Sbjct 794 TTGGATTTCCCGTTAAGTT-ACGTATGCGAGTTCTAGAGGATGTTGAGAAAGATGAATGG 852
Query 588 TCAAAATATGTCTACACTTTTCCGGAGATTAATAAAGCCCATG-ATCTCGACC-TTAGAC 645
|| | |||||| || | || || | | ||| || | |||| || || | |
Sbjct 853 TCGACATATGT-TA-A-GGTT---AAG-GT--T-AAG--CA-GAATCT-TTCCGTT-G-C 896
Query 646 TTGATGGAGTGACTGCTGCAGGTGAAATTGTATT-TTCAAGGTGGAAATCTACATGTAAA 704
|| ||| |||||||| | ||||| ||||| || ||| | | ||||| | | | |||
Sbjct 897 -TG--GGA-TGACTGCTACCGGTGACATTGTTTTGTTC-A--T-GAAATTTGCGTCTAAT 948
Query 705 CCGTTTTATGTTTTATACTACAATCCCGG-AAGGAA--CACTC----TCCAAAACGTTGA 757
|||||||||||||| |||| |||| |||| |||||| | ||| |||||| |||||
Sbjct 949 CCGTTTTATGTTTTCTACTTCAAT-CCGGAAAGGAACTCTCTCGAAGTCCAAAGTGTTGA 1007
Query 758 AATCCAAGGTTTTGGAGATATTCATGAAGCGTCTCGGCCTCATTGCAGTGTTTATACCAC 817
|||||||||| |||||| || || || | || | ||| || || | ||
Sbjct 1008 AATCCAAGGTCTTGGAGCTAATCCTG-A-----TC-G---CATAGC-TTG-CAACGCCTT 1055
Query 818 TGTAGATTATGTAGAGGATCTTAGTGTTAACGATGCAA 855
||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TGTAGATTATGTAGAGGATCTTAGTGTTAACGATGCAA 1093
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 80.5 bits (43), Expect = 3e-14
Identities = 142/186 (76%), Gaps = 22/186 (12%)
Strand=Plus/Plus
Query 261 ACATTAGGA-ACTGGAAAAATGAGGTGGAGGAAGATCCAATGTCCCTTAATC-C-A--TG 315
||||||||| | |||| | ||| ||||| |||||| |||||||| | | | | | ||
Sbjct 526 ACATTAGGAGA-TGGAGATCTGACATGGAGAAAGATCAAATGTCCCGT-ACCACGACCTG 583
Query 316 GT-TTTAGTTGTGAAGGGATATGCATCAATGGGGTTTTGTATTACTTAGCTTACA-AATT 373
|| || || |||| |||||||||||||||||||||||||||| ||||||| | | || |
Sbjct 584 GTATTAAG-GGTGATGGGATATGCATCAATGGGGTTTTGTATTTCTTAGCTGAGAGAAAT 642
Query 374 TGATATA-ACGTCTGATGATAAAACTCACTTGCTAGTTTGCTTTGATGTTAGGTCTGAAA 432
|| || | ||||||| || | | | ||||||||||||||||||||||||| |
Sbjct 643 -GAGCTAGA-GTCTGAT--TA----TG--T-GATAGTTTGCTTTGATGTTAGGTCTGAGA 691
Query 433 AAGTCA 438
|| |||
Sbjct 692 AATTCA 697
> AT2G16450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7131520-7132803 REVERSE LENGTH=1284
Length=1284
Score = 58.4 bits (31), Expect = 2e-07
Identities = 39/43 (91%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 406 TAGTTTGCTTTGATGTTAGGTCTGAAAAAGTCAAGTTTGTTGA 448
||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 728 TAGTTTGCTTTGATGTTAGGTCTGAAAAATTCACCTTTATTGA 770
> AT1G30940.1 | Symbols: | pseudogene, F-box protein -related,
contains TIGRfam:TIGR01640 F-box protein interaction domain
| chr1:11021984-11023320 REVERSE LENGTH=1337
Length=1337
Score = 58.4 bits (31), Expect = 2e-07
Identities = 45/51 (88%), Gaps = 3/51 (6%)
Strand=Plus/Plus
Query 825 TATGTAGAGGATCTTAGTGTTAACGATGCAAA---ACAACTCAATTCAAGC 872
|||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1071 TATGTAGAGGATCTTAGTGTTAACGATGCAGTGCGACAACTCAAGTCAAGC 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5