BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922306

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32250.1 | Symbols:  | Calcium-binding EF-hand family protei...   776    0.0  


> AT1G32250.1 | Symbols:  | Calcium-binding EF-hand family protein 
| chr1:11639843-11640343 FORWARD LENGTH=501
Length=501

 Score =  776 bits (420),  Expect = 0.0
 Identities = 474/501 (95%), Gaps = 0/501 (0%)
 Strand=Plus/Plus

Query  22   ATGAGTCACAAAGTCTCCAAGAAGTTAGACGAGGAGCAAATCAATGAGCTCCGGGAGATT  81
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAGTCACAAAGTCTCCAAAAAGTTAGACGAGGAGCAAATCAATGAGCTCCGGGAGATT  60

Query  82   TTCCGGTCATTTGATCGGAACAAAGACGGAAGTTTAACTCAGCTCGAGCTCGGATCACTT  141
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   TTCCGGTCATTTGATCGGAACAAAGACGGAAGCTTAACTCAGCTCGAGCTCGGATCACTT  120

Query  142  CTCCGAGCACTAGGGGTTAAACCAAGTCCAGACCAATTCGAAATGCTTATAGACAAAGCC  201
            ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  121  CTCCGAGCACTAGGGGTTAAACCAAGTCCAGACCAATTCGAAACGCTAATAGACAAAGCC  180

Query  202  GACACTAAAAGCAACGGACTGGTCGAGTTCCCGGAGTTTGTGGCTTTAGTCTCACCGGAG  261
            |||||||||||||||||||| || |||||||||||||| || ||||| ||||| ||||||
Sbjct  181  GACACTAAAAGCAACGGACTCGTAGAGTTCCCGGAGTTCGTAGCTTTGGTCTCTCCGGAG  240

Query  262  CTTCTTTCGGCGGCCAAGAGGACAACTCCTTACACGGAGGAGCAGCTCCTCCGATTGTTT  321
            ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  241  CTTCTTTCGCCGGCGAAGAGGACAACTCCTTACACGGAGGAGCAGCTTCTCCGATTGTTT  300

Query  322  AGGATATTCGACACCGACGGAAACGGGTTTCTAACTGCGGCGGAATTGGCTCACTCTATG  381
            |||||||||||||| || || ||||||||| | |||||||||||||||||||||||||||
Sbjct  301  AGGATATTCGACACGGATGGCAACGGGTTTATCACTGCGGCGGAATTGGCTCACTCTATG  360

Query  382  GCTAAGCTTGGCCACGCCTTGACGGTTGCGGAATTGACGGGGATGATTAAGGAGGCGGAT  441
            |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct  361  GCTAAGCTTGGCCACGCCTTGACGGTGGCGGAATTGACGGGGATGATAAAGGAGGCGGAT  420

Query  442  AGCGACGGCGATGGCCGGATTAATTTTCAAGAGTTCGCTAAGGCTATCAACTCTGCTGCA  501
            ||||| ||||||||||||||||| || || |||||||| |||||||| ||||||||||||
Sbjct  421  AGCGATGGCGATGGCCGGATTAACTTCCAGGAGTTCGCAAAGGCTATTAACTCTGCTGCA  480

Query  502  TTTGATGATTTATGGGGTTGA  522
            ||||||||| |||||||||||
Sbjct  481  TTTGATGATATATGGGGTTGA  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25971053999


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5