BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922313
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32320.1 | Symbols: ATMKK10, MKK10 | MAP kinase kinase 10 | ... 1258 0.0
> AT1G32320.1 | Symbols: ATMKK10, MKK10 | MAP kinase kinase 10
| chr1:11655156-11656073 FORWARD LENGTH=918
Length=918
Score = 1258 bits (681), Expect = 0.0
Identities = 850/931 (91%), Gaps = 14/931 (2%)
Strand=Plus/Plus
Query 21 ATGACACTTGTTAGAGAGCGACGTCACCAAGAACCTCTCACACTCTCTATTCCACCACTT 80
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACACTTGTTAGAGAACGACGTCACCAAGAACCTCTCACACTCTCTATTCCACCACTT 60
Query 81 CTTTACCACCGCATCGCCTTCTCCGCCGCATCTTCTTCATCGTCAAGCCCTGACTCATCG 140
|||||||| ||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 61 ATTTACCACGGCACCGCCTTCTCCGTGGCATCTTCTTCATCGTCAAGCCCTGAAACATCG 120
Query 141 CCGGTTGAAACCATAAACGATCTCGAGAAACTCGCCGTTTTAGGACAAGGAAGCGGTGGG 200
||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CCGATTCAAACCTTAAACGATCTCGAGAAACTCTCCGTTTTAGGACAAGGAAGCGGTGGG 180
Query 201 ACAGTCTACAAAACCCGTCACCGGAGAACCAAAACACTCTACGCGTTAAAAGTCCTTAGG 260
||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 181 ACAGTCTACAAAACCCGTCACCGGAGAACCAAAACGCTTTACGCCTTAAAAGTCCTCCGG 240
Query 261 TCAAATCTCAACACCACGACGACGACAACCACCGCCGTGGAAGTAGACATTCTCAAGCGA 320
|||||||||||| | | ||| | || |||| |||| ||||| |||||||||
Sbjct 241 CCAAATCTCAACA-C-C-ACG--G----TCA---CCGTCGAAGCCGACATCCTCAAGCGA 288
Query 321 ATCAAATCCAGCTTTATTGTCAAATGCTACGCTGTTTTCCTTAATTCATCCGATCTCTGT 380
||| |||| || ||||| | |||||||| || ||||| ||| || || ||||||||||
Sbjct 289 ATCGAATCGAGTTTTATCATTAAATGCTATGCCGTTTTTGTTAGTTTATACGATCTCTGT 348
Query 381 TTCGTGATGGAGCTAATGGAGAAAGGATCTCTCCACGACGCATTGCTTGCTCAACAAGTT 440
|||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 349 TTCGTGATGGAGCTTATGGAGAAAGGATCTCTCCATGACGCGTTACTTGCTCAACAAGTT 408
Query 441 TTCACCGAGCCAATGATATCGACTCTCGCTAACAGAATCCTCCAAGGGTTACGTTATCTG 500
||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 409 TTCTCCGAGCCAATGGTATCGAGTCTCGCTAACAGAATCCTCCAAGGGTTACGTTATCTG 468
Query 501 CAAGAAATGAGAATAGTTCATGGAGACATAAAGCCTTCAAATCTCCTTATCAATAATAAA 560
||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 469 CAAAAAATGGGAATAGTTCATGGAGACATAAAGCCTTCAAATCTCCTTATTAATAAGAAA 528
Query 561 GGAGAGGTCAAGATTGCAGATTTTGGTGCGAGCAGGATTGTAGCCGGAGGAGACTATGGA 620
||||||||||||||||| |||||||| || || ||||| |||||||||||||||||||||
Sbjct 529 GGAGAGGTCAAGATTGCGGATTTTGGAGCAAGTAGGATAGTAGCCGGAGGAGACTATGGA 588
Query 621 TCCAATGGTACATGTGCTTATATGAGTCCTGAACGTGTGGATCCAGAGAAATGGGGTTTT 680
|| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 589 TCGAATGGGACATGTGCTTATATGAGTCCTGAACGTGTAGATCTAGAGAAATGGGGTTTT 648
Query 681 GGAGGAGAAGTTGGATTTGCAGGAGATGTGTGGTCATTAGGAGTTGTGGTTCTTGAGTGT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GGAGGAGAAGTTGGATTTGCAGGAGATGTGTGGTCATTAGGAGTTGTGGTTCTTGAGTGT 708
Query 741 TACATTGGAAGATATCCATCGACCAAAGTTGGGGATAAACCGGATTGGGCGGCTTTGATT 800
||||||||||||||||||| ||||||||||||||||||||||||||||||| | || |||
Sbjct 709 TACATTGGAAGATATCCATTGACCAAAGTTGGGGATAAACCGGATTGGGCGACATT-ATT 767
Query 801 T-GTGCGATTTGCTGCAATGAGAAGGTGGAGATTCCGGTGAGTGGTTTGCCGGAGTTTAG 859
| |||| ||||||||||||||||||||||| ||||| |||||| ||| | |||||||||
Sbjct 768 TTGTGCAATTTGCTGCAATGAGAAGGTGGATATTCCAGTGAGTTGTTCGTTGGAGTTTAG 827
Query 860 AGATTTTGTTGGGAGATGTTTGGAGAAGGATTGGAGGAAGAGAGGCACTGTGGAAGAGCT 919
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 828 AGATTTTGTTGGGAGATGTTTGGAGAAGGATTGGAGGAAGAGAGACACTGTGGAAGAGCT 887
Query 920 TCTTCGTCATTCTTTTGTGAAAAACAGATAG 950
|||||||||||||||||||||||||||||||
Sbjct 888 TCTTCGTCATTCTTTTGTGAAAAACAGATAG 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47571737209
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5