BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922321
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32360.1 | Symbols: | Zinc finger (CCCH-type) family protei... 1860 0.0
> AT1G32360.1 | Symbols: | Zinc finger (CCCH-type) family protein
| chr1:11672931-11675339 FORWARD LENGTH=1726
Length=1726
Score = 1860 bits (1007), Expect = 0.0
Identities = 1140/1202 (95%), Gaps = 17/1202 (1%)
Strand=Plus/Plus
Query 4 CTTCGAGTTTTCACACGATGAGTCATCATCACCGGCGAGATTCCGGCGGAGATGTAGTTC 63
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 378 CTTCGATTTTTCACACGATGAG---TCATCACCGGCGAGATTCCGGCGGAGATGTAGTTC 434
Query 64 ATGTGATACCCACAAACAATCCTCCGCCGGAGAATTGGTTTCCGAATCTCGGCGATAGTG 123
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 435 ACGTGATTCCCACAAACAATCCTCCGCCGGATAATTGGTTTCCGAATCTCGGCGATAGTG 494
Query 124 CCGTTTGGGCGACGGAAGATGATTACAATCGAGCTTGGGCGATGAATCCCGATAACACCT 183
| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 495 CTGTTTGGGCGACGGAAGATGATTACAATAGAGCTTGGGCTATGAATCCCGATAACACCT 554
Query 184 CCGGTGACAACAATGGTCCACCGAACAAGAAGACTCGAGGCTCTCCGTCGTCTTCATCAG 243
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CCGGCGACAACAATGGTCCACCGAACAAGAAGACTCGAGGCTCTCCGTCGTCTTCATCAG 614
Query 244 CCACCACTACTTCCGCCGCGAGCAATCGTACCAAAGCGATTGGGAAAATGTTCTTCAAGA 303
|||| |||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 615 CCACGACTACTTCTGCTGCGAGCAATCGTACTAAAGCGATTGGGAAAATGTTCTTCAAGA 674
Query 304 CGAAGCTTTGTTGCAAGTTTCGTGCTGGGACTTGTCCGTATATAACTAATTGTAACTTTG 363
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 675 CGAAGCTTTGTTGCAAGTTTCGTGCTGGGACTTGTCCGTATATAACGAATTGTAACTTTG 734
Query 364 CTCATACGGTGGAGGAGCTTCGTCGTCCACCGCCGAATTGGCAGGAGATTGTGGCGGCTC 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CTCATACGGTGGAGGAGCTTCGTCGTCCACCGCCGAATTGGCAGGAGATTGTGGCGGCTC 794
Query 424 ATGAGGAGGAGAGATCTGGTGGTATGGGAACTCCTACCGTTGCTGTGGTTGAGCTGCCAC 483
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | ||||
Sbjct 795 ATGAGGAGGAGAGATCTGGTGGTATGGGAACTCCTACAGTTTCTGTGGTTGAGATTCCAC 854
Query 484 GGGAGGAGTTTCAGATCCCGTCTTTGGTGTCATCGACGGCTGAGAGTGGGAGATCTTTTA 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GGGAGGAGTTTCAGATCCCGTCTTTGGTGTCATCGACGGCTGAGAGTGGGAGATCTTTTA 914
Query 544 AAGGAAGACATTGTAAGAAGTTTTATACTGAAGAAGGATGTCCTTATGGAGAGAGTTGTA 603
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 915 AAGGAAGACATTGTAAGAAGTTTTATACTGAAGAAGGATGTCCTTATGGAGAAAGTTGTA 974
Query 604 CGTTTCTGCACGATGAGGCTTCGAGGAATAGAGAAAGCGTTGCTATTAGTTTAGGACCtg 663
|||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 975 CGTTTCTGCATGATGAGGCTTCGAGGAATAGAGAGAGTGTTGCTATTAGCTTAGGACCTG 1034
Query 664 gcggttatggaagtggcggtggtggtggtggaagtggagttggttctggtggtggtggtg 723
| |||||||||||| |||||||||||||||||||| | ||||||| || ||||||||
Sbjct 1035 GTGGTTATGGAAGT---GGTGGTGGTGGTGGAAGTGGCGGTGGTTCT-GT--TGGTGGTG 1088
Query 724 gtggtagtagtagcaatgtagtagtgcttggtggtggtggtggaagtggaagtgg-A--- 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1089 GTGGTAGTAGTAGCAATGTAGTAGTGCTTGGTGGTGGTGGTGGAAGTGGAAGTGGAAGTG 1148
Query 780 --ATTAATATTTTGAAGCCTTCAAATTGGAAGACAAGGATTTGCAACAAATGGGAGATTA 837
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 GGATTCAGATTTTGAAGCCTTCAAATTGGAAGACAAGGATTTGCAACAAATGGGAGATTA 1208
Query 838 CTGGGTATTGTCCATTTGGTGCTAAGTGTCATTTTGCTCATGGAGCTGCAGAGTTACATA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 CTGGGTATTGTCCATTTGGTGCTAAGTGTCATTTTGCTCATGGAGCTGCAGAGTTACATA 1268
Query 898 GATTTGGCGGAGGACTCGTAGAAGAAGAAGGCAAAGACGGAGTATCACCCAATCCGGACA 957
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1269 GATTTGGCGGAGGACTCGTGGAAGAAGAAGGCAAAGATGGAGTATCACCCAATCCGGACA 1328
Query 958 CAAAGCAAACAGTACAAAACCCGAAAGGAC-ATGCAGACACAGCAACACTTCTATCTCCA 1016
|||||||||||||||||||||| ||||||| || |||||||| |||||||||||||||||
Sbjct 1329 CAAAGCAAACAGTACAAAACCCCAAAGGACTAT-CAGACACAACAACACTTCTATCTCCA 1387
Query 1017 GGAGTTCCTCATAATGCAGATGCCGGTTACCACAGTGGAGTCGCATTGCAACGAGCGTCT 1076
||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct 1388 GGAGTACCTCATAATGCAGATGCCAGTTACCACACTGGAGTTGCATTGCAACGAGCGTCT 1447
Query 1077 AGTGCGGTAACACAAAAGCCTGGAGTCAGAACACATCAGAAGTGGAAAGGTCCGGCGAAA 1136
|||||||| ||||||||||||||| | ||||| ||||||||||||||||| |||||||||
Sbjct 1448 AGTGCGGTTACACAAAAGCCTGGAATTAGAACTCATCAGAAGTGGAAAGGACCGGCGAAA 1507
Query 1137 ATCAGTCGGATATACGGTGATTGGATCGACGATATTGAATAAAGTTATCGCTGTCTTTTT 1196
|||||||||||||||||||||||||||||||||||||||| | |||| | || |||||||
Sbjct 1508 ATCAGTCGGATATACGGTGATTGGATCGACGATATTGAATGATGTTACCTCTTTCTTTTT 1567
Query 1197 TC 1198
||
Sbjct 1568 TC 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58885239285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5