BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922328

Length=800
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32430.1 | Symbols:  | F-box and associated interaction doma...   457    9e-128


> AT1G32430.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:11704932-11706325 REVERSE LENGTH=1143
Length=1143

 Score =  457 bits (247),  Expect = 9e-128
 Identities = 335/377 (89%), Gaps = 8/377 (2%)
 Strand=Plus/Plus

Query  107  ATCCAAGATTTATTCGGTTAGCGTCAATCCCAAGGTAGAGGTGCGTGAGTTAACCCTAAA  166
            ||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct  174  ATCCAAGATTTATTCAGTAAGCGTCAATCCCAAGGTAGAGGTGCGTGAGTTAACCTTAAA  233

Query  167  TACTCCCGGTTTAAAACCTCAGATACCTATAAGCTTGGTTGATACCAGTGGATTCTTGCT  226
            || ||||||||||||| |||| | || || ||  ||| ||| |||||||||||| |||||
Sbjct  234  TAATCCCGGTTTAAAAGCTCAAAGACATAAAAATTTGTTTGCTACCAGTGGATTATTGCT  293

Query  227  TTGTGGCATGGGTGAA-GGAGCCGTGGTTTGGAACCCTTGGTTAAGACAGACTAGATGCA  285
            ||||| | ||||| || |||||||||||||||||||||||||||| |||| |||||||||
Sbjct  294  TTGTGACGTGGGT-AATGGAGCCGTGGTTTGGAACCCTTGGTTAAAACAGTCTAGATGCA  352

Query  286  TCAAGCCCGAGGTTAACCAACCTAGTTTAGATTTTATTGGCATAGGTTATGATAATAATA  345
            |||||| |||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct  353  TCAAGCTCGAGGTTAACGAACCTAGTTTGGATTTTCTTGGCATAGGTTATGATAATAATA  412

Query  346  AGAGAGTTGAGGAAATTGTTTACAAGACCCTTTCCGTTTATATGAAGGACTTAGGCTCT-  404
            ||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||| 
Sbjct  413  AGAGAGTTGAGGAAATTGTTTACAAAACACTTTCGGTTTATATGAAAGACTTAGGCTCTC  472

Query  405  ACCGATACGTGGAAAATCCATGACTTTGCTTCCGATACGTGGACAGATGAAGAT-TTAGA  463
            |   ||||||||||||||||||||||||| ||||||||||||| |||  ||||  || ||
Sbjct  473  AAT-ATACGTGGAAAATCCATGACTTTGCCTCCGATACGTGGATAGACCAAGAGATT-GA  530

Query  464  CGAAG-CAAAATATAGT  479
              ||| |||||||||||
Sbjct  531  A-AAGACAAAATATAGT  546


 Score =  124 bits (67),  Expect = 1e-27
 Identities = 71/73 (97%), Gaps = 0/73 (0%)
 Strand=Plus/Plus

Query  21  ATGGCGAATAAGGAGAAGCTTCCATGGGATTTGGTGGAAGAGATCCTATCTCGTGTCTCT  80
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct  1   ATGGCGAATAAGGAGAAGCTTCCATGGGATTTGGAGGAAGAGATCCTATCTCGTGTCCCT  60

Query  81  CCTACTTCTCTTG  93
           |||||||||||||
Sbjct  61  CCTACTTCTCTTG  73



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38931463925


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5