BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922337
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32470.1 | Symbols: | Single hybrid motif superfamily prote... 894 0.0
AT2G35370.1 | Symbols: GDCH | glycine decarboxylase complex H |... 584 3e-166
> AT1G32470.1 | Symbols: | Single hybrid motif superfamily protein
| chr1:11739304-11740361 REVERSE LENGTH=791
Length=791
Score = 894 bits (484), Expect = 0.0
Identities = 526/546 (96%), Gaps = 4/546 (1%)
Strand=Plus/Plus
Query 6 aaaaaaagaaaccagaagaaa-aaaTGGCATTGAGAATGTGGGCTTCCTCTACAGCAAAT 64
||| ||| ||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 93 AAACAAACAAACCAGAA-AAAGGAATGGCACTGAGAATGTGGGCTTCCTCTACAGCAAAT 151
Query 65 Gctctcaagctctcttcttctgtctccaaatctcatctcttgccagctttctctatctcc 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 152 GCTCTCAAGCTCTCTTCTTCTGCCTCCAAATCTCATCTCTTGCCAGCTTTCTCCATCTCC 211
Query 125 agatgcttctcCTCAGTGTTGGAAGGACTTAAGTATGCAAATTCACATGAGTGGGTGAAA 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 AGATGCTTCTCCTCAGTGTTGGAAGGACTTAAGTATGCAAATTCACATGAGTGGGTGAAA 271
Query 185 CATGATGGCTCAGTTGCTACAATTGGTATCACTGACCATGCCCAGGACCATTTAGGAGAA 244
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 272 CATGAAGGCTCAGTTGCTACAATTGGTATCACTGACCATGCGCAGGACCATTTAGGAGAA 331
Query 245 GTTGTATTTGTGGAGCTACCAGAAGCAAACAGTTCAGTGAGCAAAGAAAAAAGCTTTGGA 304
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 332 GTTGTGTTTGTGGAGCTGCCTGAAGCAAACAGTTCAGTGAGCAAAGAAAAAAGCTTTGGA 391
Query 305 GCTGTTGAGAGTGTTAAGGCCACAAGTGAGATTCTATCTCCAATCTCCGGTGAAGTCATT 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 392 GCTGTTGAGAGTGTTAAGGCCACAAGTGAGATTCTATCTCCAATCTCTGGTGAAGTCATT 451
Query 365 GAGGTTAACACGAAGCTCACCGAGTCACCTGGTTTGATCAACTCAAGCCCTTATGAAGAT 424
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 GAGGTTAACACAAAGCTCACCGAGTCACCTGGTTTGATCAACTCAAGCCCTTATGAAGAT 511
Query 425 GGTTGGATGATAAAGGTGAAACCAAGCAGCCCCGCGGAGTTGGAAGC-CTTGATGGGTCC 483
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 512 GGTTGGATGATAAAGGTGAAACCGAGCAGCCCCGCGGAGTTGGAAGCTCT-GATGGGTCC 570
Query 484 AAAGGAATACACCAAGTTCTGCGAAGATGAAGACGCTGCTCACTAGGGTTTCTTCGCCTT 543
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 571 AAAGGAATACACCAAGTTCTGCGAAGAAGAAGACGCTGCTCACTAGGGTTTCTTCGCCTT 630
Query 544 TCATCT 549
| ||||
Sbjct 631 TTATCT 636
> AT2G35370.1 | Symbols: GDCH | glycine decarboxylase complex H
| chr2:14891102-14892218 FORWARD LENGTH=803
Length=803
Score = 584 bits (316), Expect = 3e-166
Identities = 451/515 (88%), Gaps = 13/515 (3%)
Strand=Plus/Plus
Query 21 aagaaaaaaTGGCATTGAGAATGTGGGCTTCCTCTACAGCAAATGctctcaagctctctt 80
||| |||||||||| | |||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 130 AAGCAAAAATGGCACTAAGAATGTGGGCTTCTTCTACAGCAAACGCTCTCAAGCTTTCTT 189
Query 81 cttctgtctccaaatctcatctcttgccagctttct-ctatctccagatgcttctcCTCA 139
||||||| ||||| ||||||||| | | |||||| || |||| |||||||||||| ||
Sbjct 190 CTTCTGTTTCCAAGTCTCATCTC-T--CTCCTTTCTCCT-TCTCTAGATGCTTCTCCACA 245
Query 140 GTGTTGGAAGGACTT-AAGTATGCAAATTCACATGAGTGGGTGAAACATGATGGCTCAGT 198
|| |||| ||| || |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 246 GTTTTGG-AGGGTTTGAAGTATGCAAATTCACATGAGTGGGTTAAACATGAAGGCTCTGT 304
Query 199 TGCTACAATTGGTATCACTGACCATGCCCAGGACCATTTAGGAGAAGTTGTATTTGTGGA 258
||| || ||||| ||||||| |||||| |||||||||||||| ||||| || ||||| ||
Sbjct 305 TGCCACCATTGGCATCACTGCCCATGCTCAGGACCATTTAGGTGAAGTGGTGTTTGTTGA 364
Query 259 GCTACCAGAAGCA-AACAGTTCAGTGAGCAAAGAAAAAAGCTTTGGAGCTGTTGAGAGTG 317
|| |||| || | || | ||||||||||||||| |||||||||||||| || |||||||
Sbjct 365 ACTGCCAG-AGGACAATACTTCAGTGAGCAAAGAGAAAAGCTTTGGAGCAGTGGAGAGTG 423
Query 318 TTAAGGCCACAAGTGAGATTC-TATCTCCAATCTCCGGTGAAGTCATTGAGGTTAACACG 376
| ||||| |||||||||| || |||| |||||||| |||||| ||||||||||||||| |
Sbjct 424 TGAAGGCAACAAGTGAGA-TCTTATCACCAATCTCAGGTGAAATCATTGAGGTTAACAAG 482
Query 377 AAGCTCACCGAGTCACCTGGTTTGATCAACTCAAGCCCTTATGAAGATGGTTGGATGAT- 435
|||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 483 AAGCTCACAGAATCACCTGGCTTGATCAACTCAAGCCCCTATGAAGATGGTTGGATGATC 542
Query 436 AAAGGTGAAACCAAGCAGCCCCGCGGAGTTGGAAGCCTTGATGGGTCCAAAGGAATACAC 495
||| ||||||||||| |||||||||||||||||| | |||||||||||||||||||||||
Sbjct 543 AAA-GTGAAACCAAGTAGCCCCGCGGAGTTGGAATCTTTGATGGGTCCAAAGGAATACAC 601
Query 496 CAAGTTCTGCGAAGATGAAGACGCTGCTCACTAGG 530
|||||||||||| || ||||| |||||||||||||
Sbjct 602 CAAGTTCTGCGAGGAGGAAGATGCTGCTCACTAGG 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26322693028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5