BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922338

Length=985
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32480.1 | Symbols: IDH-IV | isocitrate dehydrogenase IV | c...   470    1e-131
  AT1G32470.1 | Symbols:  | Single hybrid motif superfamily prote...  78.7    1e-13 


> AT1G32480.1 | Symbols: IDH-IV | isocitrate dehydrogenase IV | 
chr1:11741083-11741990 FORWARD LENGTH=908
Length=908

 Score =  470 bits (254),  Expect = 1e-131
 Identities = 318/349 (91%), Gaps = 3/349 (1%)
 Strand=Plus/Plus

Query  357  CGGGAGCACGAAGTTGTTCCCGGTGTCATACAGAGCTTTCAGGTAACAATGACTAAGTTC  416
            |||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||
Sbjct  331  CGGGAGCACGAAGTTGTTCCCGGTGTCATAGAGAGTTTTCAGGTGACAATGACAAAGTTC  390

Query  417  TGGTCTGATCGTATAGCAAAGTATGCTTTTGAATATGCTAAATTAAGCAAGAGGAAGAAA  476
            ||||| |||||||| || ||||||||||||||||||||| | || ||||| |||||||||
Sbjct  391  TGGTCAGATCGTATTGCTAAGTATGCTTTTGAATATGCTCACTTCAGCAAAAGGAAGAAA  450

Query  477  GTTACAGCAGTTCACAACAAGGGAAAACACGAAAAACTGGCTGATTCATTCTTCTTGGAA  536
            |||||||||||||||||||| |||||| |||||||||| |||||| | || |||||||| 
Sbjct  451  GTTACAGCAGTTCACAACAATGGAAAATACGAAAAACTAGCTGATGCGTTTTTCTTGGAG  510

Query  537  TCTTGTCAAGAAGTTGCTAAAATGTATCCAAGTATCACCTACAACGAAATCGGTATTGAT  596
            |||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||
Sbjct  511  TCTTGTCAAGAAGTTGCTAAAATGTATCCAAACATCACCTACAACGAAATCGGTATTAAT  570

Query  597  AAATGCTGTTTGCAACTTGTAGAGAAACCAGAGCGATTCGACGTCATTGTAACTCCAAAT  656
            || ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  571  AACTGCTGTTTGCAGCTAGTAGAGAAACCAGAGCGATTCGACGTCATAGTAACTCCAAAT  630

Query  657  CTCTATGGGAACATAATTGCAAACATTGCTGT-TGGTATTGCTGGAGGA  704
            |||||||||   |||||||||||||||||| | |||| |||||||||||
Sbjct  631  CTCTATGGGCT-ATAATTGCAAACATTGCT-TCTGGTGTTGCTGGAGGA  677


 Score =  348 bits (188),  Expect = 7e-95
 Identities = 222/239 (93%), Gaps = 0/239 (0%)
 Strand=Plus/Plus

Query  727  CTGGAGGAAGTTTTGGTTCTGAGTATGCAATCTTTGATCAAGTTGGATCAGTAGAAAACC  786
            |||||||||||||||||  ||| |||||||||||||| |||||||||||||||| |||||
Sbjct  670  CTGGAGGAAGTTTTGGTGATGACTATGCAATCTTTGAGCAAGTTGGATCAGTAGGAAACC  729

Query  787  ATAAAAATCCTGTGGCATTACTGTTCTCTTCGGTTATGATGCTGAGACATCTCCTGCTTC  846
            |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct  730  ATAAAAATCCTGTGGCGTTACTGTTCTCTTCGGTTATGATGCTGAGACATCTTCTGCTTC  789

Query  847  CTTTATTTGCAGATCGGCTTGAAACCGCCATGAAACGTGTTGTCTCTGAAGGAAAGTGTG  906
            |||||||||| || |||||| |||||||| ||| ||||||| ||||||||||||||||||
Sbjct  790  CTTTATTTGCCGACCGGCTTAAAACCGCCGTGACACGTGTTATCTCTGAAGGAAAGTGTG  849

Query  907  GAAACAGTAATACTACTACACAGGAGGTTGTTGATGCTGTAATTGCAAACTTGGATTGA  965
            | ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct  850  GGAACAGTAATACAACTACACAAGAGGTTGTTGATTCTGTAATTGCAAACTTGGATTGA  908


 Score =  209 bits (113),  Expect = 3e-53
 Identities = 155/175 (89%), Gaps = 3/175 (2%)
 Strand=Plus/Plus

Query  183  GCC-AGACCCGTGACGGTTATCCACGGTGTTTTGACAAACGCGGTGGAGCAGGTGATGGA  241
            ||| || || || ||||||||| || |   | |||||||||||||| | |||||||||||
Sbjct  3    GCCTAGGCCTGTTACGGTTATCGACAGCAATGTGACAAACGCGGTGCACCAGGTGATGGA  62

Query  242  TGCAATGCATGCGCCGGTCTACTTTGAGACATACTA-CACAAAGGGGAAAAATATGAATC  300
            ||||||||| |||||||||||||| ||||||||| | || ||||||||||||||||||||
Sbjct  63   TGCAATGCAAGCGCCGGTCTACTTCGAGACATAC-ATCATAAAGGGGAAAAATATGAATC  121

Query  301  ATTTGCCGCGGGAAGTAGTGGACTCGATACGGAAGAACAAAGTGTGCTTGAATGG  355
            ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  122  ATTTGACGTGGGAAGTGGTGGACTCGATACGGAAGAACAAAGTGTGCTTGAATGG  176


> AT1G32470.1 | Symbols:  | Single hybrid motif superfamily protein 
| chr1:11739304-11740361 REVERSE LENGTH=791
Length=791

 Score = 78.7 bits (42),  Expect = 1e-13
 Identities = 45/46 (98%), Gaps = 1/46 (2%)
 Strand=Plus/Minus

Query  1   GAGATCTTAATTTGCTTTTATTGACGTTTGTGTTCTATCTTTAGAT  46
           |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  45  GAGATCTTAA-TTGCTTTTATTGACGTTTGTGTTCTATCTTTAGAT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 48224781120


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5