BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922349
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32585.1 | Symbols: | VQ motif-containing protein-related |... 889 0.0
> AT1G32585.1 | Symbols: | VQ motif-containing protein-related
| chr1:11788515-11789177 REVERSE LENGTH=663
Length=663
Score = 889 bits (481), Expect = 0.0
Identities = 611/671 (91%), Gaps = 19/671 (3%)
Strand=Plus/Plus
Query 21 ATGTATCAGCGACCACAAAATGATTACTTGAGAGTG---AAGCGGAGGAGCAACTTCGAC 77
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||||
Sbjct 1 ATGTATCAGCGACCACAAAATGATTACTTGAGAGTGAATAAGCGGAAGAGTAACTACGAC 60
Query 78 CAACTAAACGCTGACTATAACACTGTACCTCAGCCAGCGCAACCACAACCGCGAGTGCAA 137
|||||||||||||||| |||| | |||||||||| |||||| |||||||||||||||||
Sbjct 61 CAACTAAACGCTGACTCTAACTCCGTACCTCAGCTGGCGCAAACACAACCGCGAGTGCAA 120
Query 138 GTGTACATCATAGACAAGAACGACTTCAAAAGCCTTGTTCAACAACTAACGAGTTCTCAA 197
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 GTCTACATCATAGACAAGAACGACTTCAAAAGCCTTGTTCAACAACTAACGAGTCCTCAA 180
Query 198 TCATGTGACCGTTTACCACAAAACATTCCAAATCATCAAGATATTAGACCAGAGCCGATA 257
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CCATGTGACCGTTTACCTCAAAACATTCCAAAGCATCAAGATATTAGACCAGAGCCGATA 240
Query 258 AACCGGACCTCATCGATTCCTCCCAGTGCCATGGCGGGTCAAGAGGATCCCGATGTCTCG 317
|| ||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 241 AATTGGACCTCTTCGATTCCTCCCAGTGCCATGGCGGTTCAAGAGGATCCTGATGTCTCA 300
Query 318 TTGTATATG-CGTTATCTTCAAAGCTTACTCGAAGAATCATCAGGATCTAATGGAGACCA 376
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGTATATGGC-TTATCTTCAAAGCTTACTCGAAGAATCATCAGGATCTAATGGAGACCA 359
Query 377 ATTTGAACAATCACTTGATGAGTATCATTCTTATATGATGGCTCAATCTCATTCGCAACC 436
||| ||| || | ||||| ||||||||||| |||||||||||||||| ||||||
Sbjct 360 ATTCGAAGAACCTTTTGATAAGTATCATTCTCATATGATGGCTCAATC------GCAACC 413
Query 437 TCAAGATCCTACACAATCAATGCCACAGTCCAATGGTTTTGAACCTTTTCCCTCTTCCTG 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TCAAGATCCTACACAATCAATGCCACAGTCCAATGGTTTTGAACCTTTTCCCTCTTCCTG 473
Query 497 GTTCAATGGCTCGCCCCAACAAATGCAAGATGCTTCCTCATTGCAATCAACAAGAGTTGA 556
||||||||||||| ||||| ||||||| | |||||||||||||||||||||| |||||||
Sbjct 474 GTTCAATGGCTCGACCCAAGAAATGCATGGTGCTTCCTCATTGCAATCAACACGAGTTGA 533
Query 557 ----G--TATCCTCAACCACTGACTCCAAACTTCACATTTTCATCTATGACTCAACCTGG 610
| ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 534 TTATGAATATCCTCTACCACTGACTCCAAACTTCACATTTTCGTCTATGACTCAACATGA 593
Query 611 AGGTTTTGGTCCGGATCTAGATTGTATTGGTCCTGATGAG-ATTTTTGAATTTTCATACG 669
|| ||||||| ||||||||||| ||||||||||||||||| |||| ||||| |||||||
Sbjct 594 AGTTTTTGGTTCGGATCTAGATAGTATTGGTCCTGATGAGGATTTA-GAATTCTCATACG 652
Query 670 AAATAAATTGA 680
|||||||||||
Sbjct 653 AAATAAATTGA 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5