BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922353
Length=2116
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 ... 3227 0.0
> AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1
| Basic helix-loop-helix (bHLH) DNA-binding family protein
| chr1:11798810-11800988 REVERSE LENGTH=2179
Length=2179
Score = 3227 bits (1747), Expect = 0.0
Identities = 2005/2128 (94%), Gaps = 23/2128 (1%)
Strand=Plus/Plus
Query 1 ACCGGTCACCGGTTTATGGAATGACTGATTACCGGCTACAACCAACGATGAATCTCTGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 56 ACCGGTCACCGGTTTATGGAATGACTGATTACCGGCTACAACCAACGATGAATCTTTGGA 115
Query 61 CCACCGACGATAACGCTTCTATGATGGAAGCTTTCATGAGCTCTTCCGATATCTCAACTT 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CCACCGACGACAACGCTTCTATGATGGAAGCTTTCATGAGCTCTTCCGATATCTCAACTT 175
Query 121 TATGGCCACCGGCAACGACCACGACGGCGACTACGACTACGACGACAACATCAACTACGG 180
||||||| ||||| |||| || || | || ||| | ||||| || | ||||| ||
Sbjct 176 TATGGCCTCCGGCGTCGACGACAAC--C-ACGACGGCGACGAC-TGAA-A-CAACTCCGA 229
Query 181 CGACGGCGATGGAGATTCCGGCACCGGCGGGATTTAACCAGGAGACTCTTCAGCAACGTT 240
|| ||||||||||||||||||||| |||||||||||| || |||||||||||||||||||
Sbjct 230 CGCCGGCGATGGAGATTCCGGCACAGGCGGGATTTAATCAAGAGACTCTTCAGCAACGTT 289
Query 241 TACAAGCTTTGATTGAAGGGACACACGAAGGTTGGACCTACGCTATATTCTGGCAACCGT 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TACAAGCTTTGATTGAAGGAACACACGAAGGTTGGACCTACGCTATATTCTGGCAACCGT 349
Query 301 CGTACGATTTCTCCGGCGCCTCCGTGCTCGGCTGGGGAGATGGTTATTACAAAGGTGAAG 360
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 350 CGTATGATTTCTCCGGCGCCTCCGTGCTCGGATGGGGAGATGGTTATTACAAAGGTGAAG 409
Query 361 AAGATAAAGCTAAGCCGAGACAGAGATCGAGTTCGCCGCCGTTTTCTACTCCGGCGGATC 420
|||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 410 AAGATAAAGCAAACCCGAGACGGAGATCGAGTTCGCCGCCGTTTTCTACTCCGGCGGATC 469
Query 421 AGGAGTACCGGAAAAAAGTGTTGAGAGAGCTTAATTCGTTGATCTCCGGCGGTGTTGCTC 480
|||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 470 AGGAGTACAGGAAAAAAGTGTTGAGAGAGCTTAACTCGTTGATCTCCGGTGGTGTTGCTC 529
Query 481 CGTCGGATGACGCCGTTGACGAGGAAGTGACGGATACGGAGTGGTTTTTCTTGGTTTCGA 540
||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 530 CGTCGGATGACGCTGTTGATGAGGAGGTGACGGATACGGAATGGTTTTTCTTGGTTTCGA 589
Query 541 TGACGCAGAGCTTCGCTTGCGGTGCGGGATTAGCGGGTAAAGCGTTTTCGACGGGTAACG 600
|||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 590 TGACGCAGAGCTTCGCTTGCGGTGCGGGATTAGCTGGTAAAGCGTTTGCAACGGGTAACG 649
Query 601 CGGTTTGGGTTTCTGGGTCGGATCAATTATCCGGGTCGAGTTGTGAACGGGCTAAGCAAG 660
||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 650 CGGTTTGGGTTTCCGGGTCAGATCAATTATCCGGGTCGGGTTGTGAACGGGCTAAGCAAG 709
Query 661 GTGGAGTTTTTGGGATGCAGACAATTGCGTGTATTCCTTCGGCGAACGGAGTTGTGGAAG 720
| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 710 GAGGAGTGTTTGGGATGCATACTATTGCGTGTATTCCTTCGGCGAACGGAGTTGTGGAAG 769
Query 721 TCGGGTCAACGGAGCAGATCCGACAGAGTTCGGATCTTATTAACAAGGTTCGAATTCTTT 780
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 770 TCGGGTCAACGGAGCCGATCCGACAGAGTTCGGACCTTATTAACAAGGTTCGAATTCTTT 829
Query 781 TCAATTTCGACGGCGGAGCTGGAGATTTGTCGGGTCTTAATTGGAATCTTGACCCGGATC 840
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 830 TCAATTTCGACGGCGGAGCTGGAGATTTATCGGGTCTTAATTGGAATCTTGACCCGGATC 889
Query 841 AAGGTGAGAACGACCCGTCTATGTGGATTAATGACCCGATTGGAGCACCTGAATCCAACG 900
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||
Sbjct 890 AAGGTGAGAACGACCCGTCTATGTGGATTAATGACCCGATTGGAACACCTGGATCTAACG 949
Query 901 AACCGGGTAATGGAGCTCCGAGTTCTAGCTCCCAGGTTTTTTCAAAGTCTATACAGTTCG 960
|||||||||| |||||||| ||||||||||||||| |||||||||||||||| ||||| |
Sbjct 950 AACCGGGTAACGGAGCTCCAAGTTCTAGCTCCCAGCTTTTTTCAAAGTCTATTCAGTTTG 1009
Query 961 AGAATGGTAGCTCAAGCACAATAACTGAAAACCCGAATCCGGATCCGACTCCGAGTCCGG 1020
|||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1010 AGAACGGTAGCTCAAGCACAATAACCGAAAACCCGAATCTGGATCCGACTCCGAGTCCGG 1069
Query 1021 TTCATTCTCAGACCCAGAATCCGAAATTCAATAACACTTTCTCCCGAGAACTTAATTTCT 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1070 TTCATTCTCAGACCCAGAATCCGAAATTCAATAACACTTTCTCCCGAGAACTTAATTTTT 1129
Query 1081 CGACGTCAAGTTCTACTTTAGTGAAACCAAGATCCGGCGAGATAGTAAGCTTCGGTAATG 1140
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||
Sbjct 1130 CGACGTCAAGTTCTACTTTAGTGAAACCAAGATCCGGCGAGATATTAAACTTCGGCGATG 1189
Query 1141 ATGGTAAACGGAGCTCCGGAAACCCGGATCCAAGTTCTTATTCGGGTCAACCACAATTCG 1200
| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1190 AAGGTAAACGAAGCTCCGGAAACCCGGATCCAAGTTCTTATTCGGGTCAAACACAATTCG 1249
Query 1201 AAAACAAAAGAAAGAAGTCTATGGTATTGAACGAAGATAAAGTCCTATCATTCGGAGATA 1260
||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1250 AAAACAAAAGAAAGAGGTCGATGGTTTTGAACGAAGATAAAGTTCTATCATTCGGAGATA 1309
Query 1261 AAACCGCCGGAGAATCAGATCACTCCGATCTAGAAGCTTCCGTCGTGAAAGAAGTACCGG 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1310 AAACCGCCGGAGAATCAGATCACTCCGATCTAGAAGCTTCCGTCGTGAAAGAAGTAGCAG 1369
Query 1321 TAGAGAAACGTCCAAAGAAACGAGGAAGAAAACCAGCAAACGGTAGAGAAGAGCCACTAA 1380
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1370 TAGAGAAACGTCCAAAGAAACGAGGAAGAAAGCCAGCAAACGGTAGAGAAGAGCCACTAA 1429
Query 1381 ACCACGTCGAAGCAGAGAGACAAAGACGCGAGAAACTAAATCAAAGATTCTACGCGTTAC 1440
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1430 ACCACGTCGAAGCAGAGAGACAAAGACGCGAGAAACTAAACCAAAGATTCTACGCGTTAC 1489
Query 1441 GAGCGGTTGTACCAAACGTTTCGAAAATGGATAAAGCTTCGCTT-CTTGGAGACGCAATC 1499
|||||||||||||||||||||| |||||||||||||||||| || || || |||||||||
Sbjct 1490 GAGCGGTTGTACCAAACGTTTCAAAAATGGATAAAGCTTCG-TTACTCGGTGACGCAATC 1548
Query 1500 TCTTACATCAACGAGCTTAAATCGAAAGTAGTCAAAACAGAATCAGAGAAAATACAAATC 1559
|||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||
Sbjct 1549 GCTTACATCAACGAGCTTAAATCCAAAGTAGTCAAAACAGAGTCAGAGAAACTCCAAATC 1608
Query 1560 AAGAACCAGCTCGAGGAAGTGAAACTCGAGCTCGCCGGAAGAAAAGCGAGTGCTAGTGGT 1619
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 AAGAACCAGCTCGAGGAAGTGAAACTCGAGCTCGCCGGAAGAAAAGCGAGTGCTAGTGGA 1668
Query 1620 GGAGATATGTCGTCGTCGTGTTCGTCGATTAAACCGGTGGGGATGGAGATTGAAGTGAAG 1679
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1669 GGAGATATGTCGTCTTCGTGTTCTTCGATTAAACCGGTGGGGATGGAGATTGAAGTGAAG 1728
Query 1680 ATAATTGGTTGGGATGCGATGATTAGAGTTGAATCAAGTAAGAGGAATCATCCGGCGGCG 1739
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1729 ATAATTGGTTGGGACGCAATGATTAGAGTTGAATCTAGTAAGAGGAATCATCCGGCGGCG 1788
Query 1740 AGGTTGATGTCGGCGTTGATGGATTTGGAGCTGGAGGTGAATCACGCGAGTATGTCGGTG 1799
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1789 AGGTTGATGTCGGCGTTGATGGATTTGGAGTTGGAAGTGAATCACGCGAGTATGTCGGTG 1848
Query 1800 GTTAACGATTTGATGATTCAACAAGCGACGGTGAAGATGGGATTTAGGATCTATACGCAG 1859
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1849 GTTAACGATTTGATGATTCAACAAGCGACGGTGAAGATGGGTTTTAGGATCTATACGCAA 1908
Query 1860 GAACAGCTCCGAGCAAGTTTGATTTCAAAAATCGGTTAAAAGGGTGTGTTTTGA-AATTT 1918
||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1909 GAACAGCTCAGAGCAAGTTTGATTTCAAAAATCGGTTAAAAGGGTGTGTTTTGGGAAGTT 1968
Query 1919 TAGAAAGTTATGGGGTCAAATCATTATTAATTCGTTTTAGTGGCTTCAGTAATTTTGTAG 1978
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1969 TAGAAAGTTATGGGGTCAAATCATAATTAATTCGTTTTAGTGGCTTCAGTAATTTTGTAG 2028
Query 1979 ATTT-AGTTTTGTT-GTAAGAAAAATCTTAAAATAGAGCGACAAGTTTCTT-TT--GCTC 2033
|||| |||||||| | || ||||||||||||||||||||||||||||||| || ||||
Sbjct 2029 ATTTTAGTTTTGTAAG-AA-AAAAATCTTAAAATAGAGCGACAAGTTTCTTCTTTTGCTC 2086
Query 2034 TATGTT-GAGTCTTATATCGTT--ATTGTTGTATCATCC--AATGTGTAAACGTGTACAT 2088
|||||| |||||| ||||||| ||||||||||| ||| |||| |||||| |||| ||
Sbjct 2087 TATGTTTGAGTCTG-TATCGTTTTATTGTTGTATC-TCCTCAATGAGTAAACTTGTATAT 2144
Query 2089 ATTGATATGAATAATATGTGTTAGTTAC 2116
|||||||||| ||||||| |||||||||
Sbjct 2145 ATTGATATGAGTAATATGAGTTAGTTAC 2172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104919139050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5