BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922355
Length=641
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 870 0.0
> AT1G32690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G35200.1);
Has 45 Blast hits to 45 proteins in 8 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11820908-11821710
REVERSE LENGTH=803
Length=803
Score = 870 bits (471), Expect = 0.0
Identities = 599/657 (91%), Gaps = 23/657 (4%)
Strand=Plus/Plus
Query 1 TTCTCTGAA---TCAAATCGCGAAAACATGGACGAAGATGGTTTTTCACAATGTTCAAAA 57
||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3 TTCTCTGAATCTTCAAAACGCAAAAACATGGACGAAGATGGTTTTTCACAATGTTCAAAA 62
Query 58 CACTTCTCGAAACGCGGTTATTTTAGCGGCGGAGGCGTTTGTCCATTTTGTCTCCACGAA 117
||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 63 CACTTTTCAAAACGCGGTTATTTTAGCGGTGGGGGCGTTTGTCCATTTTGTCTCCACGAA 122
Query 118 CGTCTCTCTTCTCTTTGTCCAGATTGTGCTCACGATCTGCCTTGTTCGTGTAGCTCACGC 177
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 123 CGTCTCTCTTCTCTTTGTCCAGATTGTGCTCACGATCTTCCTTGTTCGTGTAGCTCACGC 182
Query 178 GCCGCCGTATCTTTCTCTCCGTCGTCTTCTTCGTCTTCCTCATCGTTCTCTATCTTCGCC 237
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 183 GCCGCCGTATCTTTCTCTCCTTCGTCTTCTTCGTCTTCCTCGTCGTTCTCTATCTTCGCC 242
Query 238 GGAGATGTTAGTTTTACTTTCTCCGGGGTTGGATCGGTGGGACGAGTCGCCAGTTTGATT 297
|||||| | ||||||| | | ||||| |||||||||||||| |||||||| |||||||||
Sbjct 243 GGAGATATCAGTTTTAATATATCCGGCGTTGGATCGGTGGGCCGAGTCGCGAGTTTGATT 302
Query 298 GAATGCGAACCGGCGTTTAGGAGATCGAAATCTATGGCGGTTCCGATTAAACCGGATTCG 357
||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||
Sbjct 303 GAATGTGAACCGGCGTTTCGGAGATCGAAATCTATGGCGATCCCGATTAAACCGGATTCG 362
Query 358 GTTATTGATTCCGGT----A----GG-AG---TAAGAAAACGTCGTCGTTTTGGAGGATG 405
||||||||||||||| | || || |||||||||||||||||||||||| ||
Sbjct 363 GTTATTGATTCCGGTTTGGATCATGGTAGGAGTAAGAAAACGTCGTCGTTTTGGAGAATT 422
Query 406 TTTATGGGAAACAGAGGAGATACTAAACCGGCGATTATGAGGAAATCAAGATCCATAGCT 465
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||
Sbjct 423 TTTATGGGAAACAGAGGAGATACTAAACCGGCTATTATGAAGAAATCAAGATCCGTTGCG 482
Query 466 GTCGCCGGAGAATCAGGATTTTCTCCGGTTCCGGTTCCGGTCGCGGCGACGGGAAAGGGT 525
||||||||||||| ||||||||||||||||||||||||| || | |||||| ||||
Sbjct 483 GTCGCCGGAGAATTTGGATTTTCTCCGGTTCCGGTTCCGG-CGA--C--CGGGAA-GGGT 536
Query 526 AAAGGTTGGAATTTTCCGAGTCCGATTAAGGTTTTCCGGCAATCAAGAGTCTCGAAGATG 585
||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 537 AAAGGCTGGAATTTTCCGAGTCCGATCAAGGTTTTCCGGCAATCTCGAGTCTCGAAGATG 596
Query 586 ATATTTCAACAACGGTCTCCATTGTATAGAGGTTGAGATTATTATTTTT--GTTAAG 640
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 597 ATATTTCAACAACGGTCTCCATTGTATAGAGGTTGAGATTATTATTTTTTTGTTAAG 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30944234552
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5