BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922385

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32920.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   394    3e-109


> AT1G32920.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: response to wounding; LOCATED 
IN: endomembrane system; EXPRESSED IN: 23 plant structures; 
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G32928.1); 
Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11928807-11929302 
FORWARD LENGTH=496
Length=496

 Score =  394 bits (213),  Expect = 3e-109
 Identities = 278/309 (90%), Gaps = 6/309 (2%)
 Strand=Plus/Plus

Query  1    TCTCTTCTCTTATTTTTTATTCGATAATGAATTCTATGTTTAGTGCCTTCGACGCTCTCT  60
            |||||||| || |||| |||| ||| |||||||||||||| |||||||||||||||||||
Sbjct  69   TCTCTTCTTTTCTTTTCTATTTGATCATGAATTCTATGTTCAGTGCCTTCGACGCTCTCT  128

Query  61   TCGCAGAACTCATGGGAAAGAACCTTATGGCTTCTCCGTTTAATGCTACTACCGCCACGG  120
            |||||||  |||||||||||||||||||||||||| |||||| |||||||||||| ||  
Sbjct  129  TCGCAGAGGTCATGGGAAAGAACCTTATGGCTTCTTCGTTTACTGCTACTACCGCAACAA  188

Query  121  CCAAACCAGCCGCCATACCGCAAACGCAAACGCAAACGCAGAAGAAGGAAAACGCAAGTA  180
            ||||||| ||||||    |||   ||||||| ||||||||| |||||| |||||||||||
Sbjct  189  CCAAACCTGCCGCC---GCGC---CGCAAACACAAACGCAGGAGAAGGCAAACGCAAGTA  242

Query  181  GCAAGAAGGTTGGTTTGGTGCAAAAGACTCCGAGGTTTGCTTTGGAGCTTGATGGTCTTC  240
            |||||||| | ||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct  243  GCAAGAAGATAGGTTTGGTGCAGAAGATTCCGAGGTTTGCTTTGGAGCTTGATGGTCTTC  302

Query  241  ACTGCTTCGAAACAATAATCCGTTCTTGATTTGATTTGTTCTTGGTTCTTGGTTTCAAGA  300
            ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||
Sbjct  303  ACTGCTTCGAAACAATAGTCCGTTCTTGATTTGATTCGTTCTTGGTTCTTGGCTTCAAGA  362

Query  301  TCAGAAACT  309
            |||||||||
Sbjct  363  TCAGAAACT  371



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5