BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922403

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G33055.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   363    6e-100


> AT1G33055.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: anaerobic respiration; 
LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; 
EXPRESSED DURING: 6 growth stages; Has 20 Blast hits 
to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:11971308-11972578 REVERSE 
LENGTH=1271
Length=1271

 Score =  363 bits (196),  Expect = 6e-100
 Identities = 230/247 (93%), Gaps = 0/247 (0%)
 Strand=Plus/Plus

Query  1    TTGAAGCTAAAGAAAATCAAGAATGTTGCTAGTGACTTTGATTGCTGAGATGATGAAGGA  60
            ||||||||||||||| | || ||||||||| |||||||||||||||||||||||||||||
Sbjct  21   TTGAAGCTAAAGAAACTAAAAAATGTTGCTGGTGACTTTGATTGCTGAGATGATGAAGGA  80

Query  61   GTACACGGTGGTGCTCGCCGGAGTTTTGGAGCATCTCTTCTCTCAAGCGCCTTTTCCGAG  120
            |||||||||||| |||||||||||| |||||||||| || ||||| ||||||||||||||
Sbjct  81   GTACACGGTGGTTCTCGCCGGAGTTGTGGAGCATCTTTTTTCTCAGGCGCCTTTTCCGAG  140

Query  121  GAGAATCCGACTTCAGATTTTATActctcttccttttcatagttccaattcatctctccc  180
             |||||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||
Sbjct  141  AAGAATCCGACTTCATATTTTATACTCTCTTCCTTTCCATAGTTCCAATACCTCTCTCCC  200

Query  181  tcttctccttccttcccctcctctttattctcgttcttcttGATGTTTATTTTCTTGCTT  240
            |||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct  201  TCTTCTTCTTCCTTCCCCTCCTCCTTATTCTCGTTCTTCTTGATGTTTCTTTTCTTGCTT  260

Query  241  ACTTTGT  247
            |||||||
Sbjct  261  ACTTTGT  267



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11209708027


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5