BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922420
Length=1691
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33250.1 | Symbols: | Protein of unknown function (DUF604) ... 2641 0.0
> AT1G33250.1 | Symbols: | Protein of unknown function (DUF604)
| chr1:12057250-12059485 REVERSE LENGTH=2060
Length=2060
Score = 2641 bits (1430), Expect = 0.0
Identities = 1608/1695 (95%), Gaps = 8/1695 (0%)
Strand=Plus/Plus
Query 1 GGAAATGTGCGCTTGGGGCGATGCGTTTAATCCTCACCGTAATGTTCTCATTCATTCCTT 60
||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 120 GGAAATGTGCGCTTGGGGCGATGCGTTTAATTCTCACCGTCATGTGCTCATTCATTCCTT 179
Query 61 ACCTTTATTCTTCTTCTCCTCACCGTCCTTGCTCTTCCCCAATCTCTCG---TCCTCCTC 117
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 ACCTTTATTCATCTTCTCCTCACCGTCCTTGCTCTTCCCCAATCTCTCGTCCTCCTCCTC 239
Query 118 GAATCCGTCGTTGCCGTCTCAGTCGTTTCGCCACCGCATTAGTCGCTACctccgctcttc 177
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAATCCGTCCTTGTCGTCTCAGTCGTTTCGCCACCGCATTAGTCGCTACCTCCGCTCTTC 299
Query 178 ttctcgcttccgtcgcttggctctctctcgtcttctctccaaccacttctcgTTGCTGGC 237
|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||
Sbjct 300 TTCTCGCTTCCGTCGCTTGGCTTTCTCTCGTCTTCTCACCAACCACTTCCCGTTGTTGGC 359
Query 238 ATCTCCTTAAAGATTGGGAAGACAACCATCTCTGGAACAAACGGTACCATCATCCCATTG 297
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 360 ATCTTCTTAAAGATTGGGAAGACAATCATCTCTGGAACAAACGGTACCATCATCCAATTG 419
Query 298 AAACTCCTCCTCCGCCACCGCCGTCGTCGCCGTCTCTTCCAGCTCTTCCTTTATTCGATC 357
||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 420 TAACTCCTCCTCCGCCGCCGCCGTCGCCGCCGTCTCTTCCAGCTCTTCCGTTATTCGATC 479
Query 358 ATGAATTTAGAAACCGTAGTCTCTCGGAGATTGATAGACTTGATCTGTTGTCTCTGAATC 417
||||||||||||| ||||||||||| |||||||||| |||||||| ||||| ||||||
Sbjct 480 ATGAATTTAGAAATCGTAGTCTCTCAGAGATTGATAAACTTGATC---TGTCTATGAATC 536
Query 418 ACTTGATGTTTGGTATTGCTGGATCTTCACAGCTTTGGGAACGTCGTAAGGAACTTGTGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACTTGATGTTTGGTATTGCTGGATCTTCACAGCTTTGGGAACGTCGTAAGGAACTTGTGA 596
Query 478 GGCTATGGTGGAAACCTTCTCAGATGCGTGGTCACGTTTGGCTTGAAGAGCAAGTTTCTC 537
| |||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 597 GATTATGGTGGAAACCTTCTCAGATGCGTGGACATGTCTGGCTTGAAGAGCAAGTTTCTC 656
Query 538 CTGAGGAAGGTGATGATTCACTTCCTCCTATCATTGTCTCTGAAGACAGCTCTCGTTTTC 597
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 657 CTGAGGAAGGTGATGATTCTCTTCCTCCTATAATTGTCTCTGAAGACAGCTCTCGTTTTC 716
Query 598 GTTACACTAATCCCACTGGTCATCCTTCTGGACTTCGAATCTCACGCATTGCTATGGAGT 657
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 717 GTTACACTAATCCTACTGGTCATCCTTCTGGACTTCGAATCTCTCGTATTGCTATGGAGT 776
Query 658 CTTTTCGTCTCTCTCTCCCTAATGTTCGGTGGTTTGTTCTTGGAGATGATGATACTATCT 717
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 777 CTTTTCGTCTCTCTCTCCCTAATGTTCGGTGGTTTGTTCTTGGTGATGATGATACTATCT 836
Query 718 TCAATGTTCACAATCTACTTGCCGTATTAAGCAAGTACGATCCTTTGGAGATGGTTTATG 777
|||||||||| ||||| ||||| || ||||||||||| ||||||| |||||||||||||
Sbjct 837 TCAATGTTCATAATCTTCTTGCTGTGTTAAGCAAGTATGATCCTTCGGAGATGGTTTATA 896
Query 778 TAGGAAACCCCTCGGAGAGTCACTCTGCTAACTCTTACTTCAGTCATAATATGGCTTTTG 837
| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 897 TTGGAAACCCCTCGGAGAGCCACTCTGCTAACTCTTACTTTAGTCATAACATGGCTTTTG 956
Query 838 GAGGCGGTGGCATCGCCATTAGCTACCCTTTAGCTGAAGCTCTCTCTCGGATTCATGACG 897
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 957 GAGGCGGTGGCATTGCCATTAGCTACCCTTTAGCGGAAGCTCTCTCCCGGATTCACGACG 1016
Query 898 ATTGTCTCGATAGATACCCGAAGCTATACGGTAGTGATGATCGCCTCCACGCCTGCATCA 957
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1017 ATTGTCTCGATAGATACCCGAAGCTATACGGTAGTGATGATCGTCTCCACGCCTGCATCA 1076
Query 958 CTGAACTCGGAGTTCCTTTATCCAGAGAGCCTGGCTTTCACCAGTGGGATATTAAGGGAA 1017
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CTGAACTCGGAGTTCCTTTGTCCAGAGAGCCTGGCTTTCACCAGTGGGATATTAAGGGAA 1136
Query 1018 ATGCTCATGGTCTCTTGTCCTCTCATCCCATTGCACCTTTTGTCTCAATTCATCATGTTG 1077
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1137 ATGCTCATGGTCTCTTGTCCTCTCATCCTATTGCACCATTTGTCTCAATTCATCACGTTG 1196
Query 1078 AAGCTGTTAATCCTCTCTATCCGGGATTATCGACATTAGATAGTTTGAAACTCTTGACAA 1137
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1197 AAGCTGTTAATCCTCTCTATCCGGGATTATCTACATTAGATAGTTTGAAACTCTTGACAA 1256
Query 1138 GAGCTATGAGTTTGGACCCCAGGAGTGTTTTGCAGCGATCGATCTGCTACGACCATACTC 1197
|||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||
Sbjct 1257 GAGCTATGAGTTTGGATCCTAGGAGTGTTTTGCAGCGATCGATCTGCTATGATCATACTC 1316
Query 1198 ATAGACTGACATTTGCGATATCTCTTGGTTATGTTGTACAAGTTTTCCCGAGTATTCTCC 1257
| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1317 ACAAACTGACATTTGCGATATCTCTTGGTTATGTTGTACAAGTTTTCCCAAGTATTCTCC 1376
Query 1258 TACCACGGGATCTTGAGCGAGCTGAACTTTCCTTCTCTGCTTGGAACGGGATAAGTCATC 1317
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1377 TACCACGGGATCTTGAGCGAGCTGAACTTTCTTTCTCTGCTTGGAACGGGATAAGTCAAC 1436
Query 1318 CGGGTGAGTTTGATCTTGACATAAAGCTTCCAATTTCATCTCTATGTAAGAAGCCTATCC 1377
| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1437 CCAGTGAGTTTGATCTTGACATAAAGCTTCCAATTTCGTCTCTCTGTAAGAAGCCTATCC 1496
Query 1378 TCTTCTTCTTGAAAGAGGTAGGACAAGATGGCAACGCTACACTCGGAACGTACTCGAGAT 1437
||||||||||||||||||| || ||||| || || |||||||| ||||||||||| ||||
Sbjct 1497 TCTTCTTCTTGAAAGAGGTTGGCCAAGAAGGTAATGCTACACTTGGAACGTACTCAAGAT 1556
Query 1438 CCTTAGTAAAGGATGATTTGAAGACGAAGCTTCTATGTTTTCCACGCTCTCTTCCTCTGC 1497
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1557 CCTTGGTAAAGGATGATTTGAAGACGAAGCTTCTATGTTTTCCACGCTCTCTACCTCTGC 1616
Query 1498 ACAAGGTGGA-AAAGATCCAAGTCTCAGGGTTTCCTCTGAGTAAAAATTGGCATTTGGCG 1556
|||| ||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1617 ACAAAGTGGATAAA-ATCCAGGTCTCAGGGTTTCCTCTGAGTAAAAATTGGCACTTGGCG 1675
Query 1557 CCGAGACGGTTGTGTTGCAGAGCAACCCCAACTACTACTAATGAGCCTCTCAGATTAACA 1616
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1676 CCGAGACGGTTGTGTTGCAGAGCAACCCCAACTACTACTAACGAGCCTCTCAGATTAACA 1735
Query 1617 GTTGGGCAGTGTGGTAAGATAATTTTGGGTTCCACGATTAGTTCTCAATGAACACTTATG 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GTTGGGCAGTGTGGTAAGATAATTTTGGGTTCCACGATTAGTTCTCAATGAACACTTATG 1795
Query 1677 GTGAATACTGGATCT 1691
|||||||||||||||
Sbjct 1796 GTGAATACTGGATCT 1810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83583907425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5