BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922431
Length=324
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10270.1 | Symbols: | Wound-responsive family protein | chr... 141 4e-33
AT4G10265.1 | Symbols: | Wound-responsive family protein | chr... 135 2e-31
> AT4G10270.1 | Symbols: | Wound-responsive family protein | chr4:6374734-6375210
FORWARD LENGTH=477
Length=477
Score = 141 bits (76), Expect = 4e-33
Identities = 214/278 (77%), Gaps = 19/278 (7%)
Strand=Plus/Plus
Query 17 AAAGATGAGTTCAACAAGCAAAGCATGGTTAGTAGCTGCAAGCATCGGAGCCGTTGAAGC 76
|||||||||||| ||||||||||||||| ||| || | |||||||||||||| || ||
Sbjct 68 AAAGATGAGTTCTACAAGCAAAGCATGGACAGTGGCAGTGAGCATCGGAGCCGTAGAGGC 127
Query 77 GTCCAAGGACCAATTAGG-CATGTGTCGCTGGAACTACTTGA-TCCGATCAGTGAATCAA 134
| || |||||| |||| | | ||||| ||||||||| | | |||| || || ||||||
Sbjct 128 ATTAAAAGACCAACTAGGTC-TTTGTCGGTGGAACTACAT-ACTCCGGTCGGTTAATCAA 185
Query 135 CGTATCCGTAACAACGTGAGATCCGCTTCTC-AGGCCAACAGATTCTCTTCTTCAACCGT 193
| | |||| |||||||| ||||| | ||||| ||| || || |||||||| || | ||
Sbjct 186 CATCTCCGGAACAACGTTAGATCTGTTTCTCAAGG-GAAAAGGTTCTCTTCGTCTTCTGT 244
Query 194 CGT-CGC-GTCCGTTA--AGGAC-GAT-A-A-C---AAGGCAAAGCAGGCTGAGGAGTCA 242
| | ||| | |||||| | | | | | | ||||| ||| ||||||| || ||
Sbjct 245 C-TCCGCAG-CCGTTACCTCCTCTGGTGAGAGCGAGAAGGCTAAGAAGGCTGAAGAATCT 302
Query 243 CTTAGGACGGTCATGTACTTGAGCTGTTGGGGTCCTAA 280
||||| || |||||||||||||||||||||||||||||
Sbjct 303 CTTAGAACAGTCATGTACTTGAGCTGTTGGGGTCCTAA 340
> AT4G10265.1 | Symbols: | Wound-responsive family protein | chr4:6373097-6373536
REVERSE LENGTH=440
Length=440
Score = 135 bits (73), Expect = 2e-31
Identities = 203/263 (77%), Gaps = 20/263 (8%)
Strand=Plus/Plus
Query 21 ATGAGTTCAACAAGCAAAGCATGGTTAGTAGCTGCAAGCATCGGAGCCGTTGAAGCGTCC 80
||||| || |||||||| | ||| | || ||||||||||||||||||||||| || |
Sbjct 60 ATGAGCTCTGCAAGCAAAACGTGGATGGTTGCTGCAAGCATCGGAGCCGTTGAGGCATTG 119
Query 81 AAGGACCAATTAGGCATGTGTCGCTGGAACTACTTGATCCGATCAGTGAATCAACGTATC 140
|| |||||| ||||| ||||||| ||||||||| |||||||||| | ||||| | |||||
Sbjct 120 AAAGACCAACTAGGCGTGTGTCGTTGGAACTACGTGATCCGATCTGCGAATC-A-GTATC 177
Query 141 --CGTAACAACGTGAGATCCGCT-TCTCAGGCCAACAGATTCTCTTCTTCAACCGTCGTC 197
|| |||||| | ||||||| | || || | | | ||| ||| |||| || || ||
Sbjct 178 TACGCAACAACTTAAGATCCG-TGTCGCAAG-CTA-AGAAGCTC-TCTT---CC-TCATC 229
Query 198 GCGTCCG-TTAAGGACGATAACAAGGCAAAGCAGGCTGAGGAGTCACTTAGGACGGTCAT 256
| || || | || |||||| | ||||| ||||| || || || ||||| |||||
Sbjct 230 -AAT-CGATT-A-TAC--CAACAAGACCAAGCAAGCTGAAGAATCGCTGAGGACAGTCAT 283
Query 257 GTACTTGAGCTGTTGGGGTCCTA 279
|||||||||||||||||||||||
Sbjct 284 GTACTTGAGCTGTTGGGGTCCTA 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15080324700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5