BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922435

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G33415.1 | Symbols:  | other RNA | chr1:12118992-12126593 FO...   113    6e-25


> AT1G33415.1 | Symbols:  | other RNA | chr1:12118992-12126593 
FORWARD LENGTH=1400
Length=1400

 Score =  113 bits (61),  Expect = 6e-25
 Identities = 69/73 (95%), Gaps = 0/73 (0%)
 Strand=Plus/Plus

Query  8    TTCGTTCTCAACAATGGATCATGATACTTGCAGCAATAAGCTTCAGAAATTCTTTGTCAC  67
            |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct  359  TTCGTTCTAAACAATGGATCATGATACTCGCAGCAATAAGCTTCAGAAATTCTTTGTCGC  418

Query  68   CATGGAAACAGCC  80
            ||||||||| |||
Sbjct  419  CATGGAAACGGCC  431



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11058904780


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5