BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922436
Length=2134
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33420.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 3290 0.0
> AT1G33420.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:12120886-12123576 REVERSE LENGTH=2501
Length=2501
Score = 3290 bits (1781), Expect = 0.0
Identities = 2022/2140 (94%), Gaps = 10/2140 (0%)
Strand=Plus/Plus
Query 1 AAAAAACCCTTGTT--ACGGTCATGGCGGTGATGAACGGTGGTCGTGCAACGAAGCGAGC 58
|||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 209 AAAAAACCCTTGTTACACAGTCATGGCGGTGATGAACGGTGGTCGTGCGACGAAGCGAGC 268
Query 59 GAGGCGTAGCAACAGAATCTCAGCCGATCTCTACGATTTCACTACTTTCCCGGCGGAGGA 118
|||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| |||
Sbjct 269 GAGGCGTAGCAACAGAATCTCAGCTGATCTTTACGATTTCTCTACTTTCCCGACGGCGGA 328
Query 119 GATGAACGGCGACTCGACAACCTTGCCGCCGTTCCGCGACGGAGTTAGAACCTTCCTCGC 178
||| |||||||| ||||| || |||||||||||||| ||||| || ||||||||||||||
Sbjct 329 GATCAACGGCGAGTCGACGACTTTGCCGCCGTTCCGAGACGGTGTGAGAACCTTCCTCGC 388
Query 179 GACCCACGCGCGTGTCACTTTCCCTCCTTCGACGCTCTTCTCGAGTCTCATGACGTGGCA 238
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 389 GACCCACGCGCGTGTCACTTTCCCTCCTTCGACGCTCTTCTCGAGTTTGATGACGTGGCA 448
Query 239 GATTATGCTCAGACCTGGAGATTCGACGGACGGTTCAGATCTCTCTTCTAAACTCGTCTC 298
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 GATCATGCTTAGACCTGGAGATTCGACGGACGGTTCAGATCTCTCTTCTAAACTCGTCTC 508
Query 299 TCTCGACGTTGTGGAGGAGGATGTGACTAGATCCTCTAGATCTGTTTACTGTGACCACTG 358
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 509 TCTCGACGTTGTGGAGGAGGATGTGACGAGATCCTCTAGATCTGTTTACTGTGAACACTG 568
Query 359 CCGAGTCGTTGGTTGGAGTAGTCATCCAGTGTGTAGAAAGAGGTACCACTTCATCATAAG 418
| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 569 CTGTGTCGTTGGTTGGAGTAGTCATCCAGTGTGTAGAAAGAGGTACCGCTTCATCATAAG 628
Query 419 GTCAGGAGGGGACACTAAGGCTTGCACGAGGTGTGGTAATACTCAGAATTTGTCCGAAGG 478
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 629 GTCAGGAGGAGACACTAAGGCTTGCACGAGGTGTGGTAATACTCAGAATTTGTCTGAAGG 688
Query 479 TAGCAATTGCAAGTGGTGTAGCATGGCTTTAGACATTGAAGACTGGGTTTACTCTCAGCT 538
|||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 689 TAGCAATTGCAAATGGTGCAGCATGGCTTTAGACATTGAAAACTGGGTTTACTCTCAGCT 748
Query 539 TGAAGACAACACTCACCTCCTTCATGGTGTTATCCACTCCAATGGCTATGCTCATCT-CT 597
|| || ||||||||||||||||| || ||||||||||| |||||||| |||||||| |
Sbjct 749 AGAGGATAACACTCACCTCCTTCACGGCGTTATCCACTCTAATGGCTACGCTCATCTAC- 807
Query 598 TGTCTCTTAATGGAAGAGAAGGTGGCTCTGGTTTTTTGACTGGTCGTGCCATTATGGACT 657
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 TGTGTCTTAATGGAAGAGAAGGTGGCTCTGGTTTTTTGACTGGTCGTGCCATTATGGACT 867
Query 658 TCTGGGACAGGCTTTGTTCCTCCCTTGCTGTTCGGAAGGCTAGTGTGATGGATGTGTCAA 717
||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 868 TCTGGGATAGGCTTTGTTCCTCCCTTGCTGTTCGAAAAGCTAGTGTGATGGATGTGTCAA 927
Query 718 GGAAGTATGGGATGGATTACCGGTTGCTTCATGGGATCACTAGAGGGTGTTCGTGGTACA 777
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 928 GGAAGTATGGGATGGACTACCGGTTGCTTCATGGGATTACTAGAGGGTGTTCGTGGTACA 987
Query 778 GTGAGTGGGGTTATGAATTCAAATCTGGGAGCTATGCACT-AACAAGAGAAGCTTACCAG 836
||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct 988 GTGAGTGGGGTTATGAATTCAAATCGGGGAGCTATGCACTCACCAA-AGAAGCTTACCAG 1046
Query 837 AGTGCCGTGGATACTTTATCTGGGATACCTCTCTCTGAGTTTTTGTTCCAAGGGAGGAAA 896
||||| |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 1047 AGTGCAGTGGATACTTTATCTGCGATTCCTCTCTCTGAGTTTTTGTTCCAGGGGAGGAAA 1106
Query 897 CCAAGAACTCAGCTCCACTCCATTATTGGCTTCTACCAATCACTCTCGTGTTTAGAGCTT 956
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1107 CCAAGAACTCAGCTCCACTCCATTATTAGCTTCTACCAATCACTCTCGTGTTCAGAGCTT 1166
Query 957 GTGACTGTGAAAGACCTCTTCTCATTTCTGCTACAGCTGATTCGTGAGAACCGTGCAAAA 1016
|||||||| |||||||||||||| ||||| |||||| |||||||||||||| || | |||
Sbjct 1167 GTGACTGTCAAAGACCTCTTCTCCTTTCTCCTACAGATGATTCGTGAGAACAGTTCCAAA 1226
Query 1017 CCTACATCTAAGTCGTCTGTACTGTGTGCTTGGTCTAAGAGTGATGTAGAACGTGTACAG 1076
||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1227 CCTGCATCTAAGTCGTCTGTACTGTGTGCTTGGTCTAAAAGTGATGTGGAACGTGTACAG 1286
Query 1077 CAAGCCATGGTTAAGATACTGAAAACTGCAGGACGTCCACGAGCCAACTGGGTTACAAGG 1136
||| |||||||||||||||||||| || ||||||| |||| |||||||||||||||||||
Sbjct 1287 CAAACCATGGTTAAGATACTGAAAGCTTCAGGACGCCCACAAGCCAACTGGGTTACAAGG 1346
Query 1137 TGGGCTCTCAAGAGGTCTATTTGCAAAACAGCCTCTCCACAACTGATTGATTACTGTCTC 1196
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1347 TGGGCTCTCAAGAGGTCTATTTGCAAATCAGCCTCTCCACAACTGATTGATTACTGTCTC 1406
Query 1197 AAGCATTTTGGAGGGGTTTTGGTGGATAATGGATCTCTAGTAGTCTGCTCCCGTTGCAAT 1256
||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||||
Sbjct 1407 AAGCATTTTGGAGGGGTTTTGGTGGATGATGGATCTCGAGTAGTCAGCTCACGTTGCAAT 1466
Query 1257 CCTGGTTCAAACGACTTTGAGTACAGGCTTGAATCTGTTGACAATGTGCACCGCTTATCT 1316
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1467 CCTGGTTCAAACGACTTTGAGTACAGGCTTGAATCTGTCAACAATGTGCACCGCTTATCT 1526
Query 1317 AATCAAGACGTAAATAATGCATCAGTGGAGCATGTCAAACGGGACTTAATATATTTGTAT 1376
|||||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct 1527 AATCAAGATGTAAATAATGCATCAGTGGAGCATGTCAAACAGGATTTAAGATATTTGTAT 1586
Query 1377 GAAACTTTATTGCACCCACAAACCATGGCCGAGTTTAGGTATCGGGCTACAAGAGATAAA 1436
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 1587 GAAACTTTATTGCACCCACAAACCATGGCCGAGTTTAGGTCTCGAGCTACAAGAGAAAAA 1646
Query 1437 ATGATTGATGCAGCCACAAAAATACTGGACTGTAAGCATTTTATAAAAGATTACCTGTCT 1496
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1647 ATGATTGACGCAGCCACAAAAATACTGGACTGTAAGCATTTCATAAAAGATTACCTGTCT 1706
Query 1497 AGCACAGCGAACCCCTTTGCAATCAGCCTCTGGTGCCATGTAGAGCTTTCGGATG-AGTC 1555
||||||| ||||||| ||||||||| |||||||||| ||| ||||||||||||| | ||
Sbjct 1707 AGCACAGTGAACCCCGTTGCAATCAACCTCTGGTGCTGTGTTGAGCTTTCGGATGAACTC 1766
Query 1556 GAAAGAATGCCCAGCCCCTCCACCTGAACTGTTGGTTTTGCCATTGAACGCTACTGTTTC 1615
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1767 -AAAGAATCCCCAGCCCCTCCACCTGAACGGTTGGTTTTGCCATTGAACGCTACTGTTTC 1825
Query 1616 TGACCTGAAAATCGAAGCTGCTAAGGCTTTTCAGGAAGTGTATGCAATGTTCAAGAGGTT 1675
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 CGACCTTAAAATCGAAGCTGCTAAGGCTTTTCAGGAAGTGTATGCAATGTTCAAGAGGTT 1885
Query 1676 TGAAGTTGAGGAGCTCCTAGGTTACGGTTCTATAGATGACTTTATTACCCTGAAATTTCT 1735
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1886 TGAAGTTGAGGAGCTCCTAGGTTACGGTTCTATAGATGACTCTATTACCCTGAAATTTCT 1945
Query 1736 AGTTGGCACAAATGGGGTCATACGGATTAAAGGGAGATGCTCAAAACACGGGCTCCTTCG 1795
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1946 AGTTGGCACAAACGGGGTCATACGGATTAAAGGGAGATGCTCAAAACACGGGCTCCTTAG 2005
Query 1796 ATACCGCATGGAGAGAGGGGTGGATAATTGGAAAGTTGATTGCAAGTGTGGCACCAAGGA 1855
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2006 ATACCGCATGGAGAGAGGGGTGGATAATTGGAAAGTTGATTGCAAGTGTGGCACAAAGGA 2065
Query 1856 TGATGATGGTGAGAGGATGTTGGCCTGTGATGGGTGTGGTGTGTGGCACCACACTAGATG 1915
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2066 TGATGATGGCGAGAGGATGTTGGCCTGTGATGGATGTGGTGTGTGGCACCACACTAGATG 2125
Query 1916 TGCTGGGATCAATAACTCCGATGCCCTACCTTCCAAGTTCCATTGTTTCAGATGCATTGA 1975
| ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 2126 TATTGGGATCAATAACGCTGATGCCCTACCTTCCAAGTTCCTTTGTTTCAGATGCATTGA 2185
Query 1976 ATTGTACAGCAAGAGACCAAAGCAATCTGATAACA-AGCGTGGATCTAGTCAAGTGCCCA 2034
||||||||||||| ||||||||||||| | || | ||||||||||||||||||||||||
Sbjct 2186 GTTGTACAGCAAGAAACCAAAGCAATCTAAAAA-AGAGCGTGGATCTAGTCAAGTGCCCA 2244
Query 2035 AAGCTGGCTTTGTTTGTAGAGGTGAGTCAGCTGCAATGGGCAGTGGATCTAATTTATCCG 2094
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2245 AAGCTGGCTTTGTTTGTAGAGGTGAGTCAGCTGCTATGGGCAGTGGATCTAATTTATCCG 2304
Query 2095 TAACACTTAGTGTAGGCTGACTGTATTTATGATCTTTCTG 2134
|||||||||| |||||||||||||||||||||||||||||
Sbjct 2305 TAACACTTAGAGTAGGCTGACTGTATTTATGATCTTTCTG 2344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105822748860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5