BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922438
Length=1845
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33440.1 | Symbols: | Major facilitator superfamily protein... 2880 0.0
> AT1G33440.1 | Symbols: | Major facilitator superfamily protein
| chr1:12127389-12130407 REVERSE LENGTH=2209
Length=2209
Score = 2880 bits (1559), Expect = 0.0
Identities = 1760/1857 (95%), Gaps = 14/1857 (1%)
Strand=Plus/Plus
Query 1 CAAGAAAAATAGAAAGAGCTATGGATGTTCATGATCTATCTGAAGAAGCTAAAAGA-G-G 58
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 61 CAAGAAAAAAAGAAAGAGCTATGGATGTTCATGATCTATCTGAAGAAGCCAAAAGAGGAG 120
Query 59 -ACTACACATGTCGGAGGAATCATCGGACGATATTTGTGTTGATTTTCGAGGTCGACCAT 117
| |||||| |||||||||||||| ||||||| |||||||||||||||||||||| ||||
Sbjct 121 TAATACACACGTCGGAGGAATCATTGGACGATCTTTGTGTTGATTTTCGAGGTCGGCCAT 180
Query 118 GCAGGCCAAGCAAGCATGGTGGTACAAGAGCTGCCCTCTTTGTTCTAGGCTTCCAAGCTT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCAGGCCAAGCAAGCATGGTGGTACAAGAGCTGCCCTCTTTGTTCTAGGCTTCCAAGCTT 240
Query 178 TCGAGATGATGGCTATCGCAGCCGTTGGCAACAACTTGATCACATATGTGTTCAATGAGA 237
||||||||||||| |||||||| ||||| ||||||||||||||||| || ||||||||||
Sbjct 241 TCGAGATGATGGCGATCGCAGCTGTTGGAAACAACTTGATCACATACGTATTCAATGAGA 300
Query 238 TGCATTTTCCTTTGTCGAAATCCGCAAACCTCGTGACTAACTTCATAGGAACGGTGTTTC 297
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TGCATTTCCCTTTGTCAAAATCCGCAAACCTCGTTACTAACTTCATAGGAACGGTGTTTC 360
Query 298 TTCTCTCGCTTCTTGGTGGCTTCCTCTCTGATTCATACCTTGGAAGCTTTCGTACCATGC 357
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCTCTCGCTTCTTGGTGGCTTCCTCTCTGATTCATACCTTGGAAGCTTTCGTACCATGC 420
Query 358 TC-TTTTTCGGCGTCATCGAAATCTCTGGTTTCATATTATTGTCAGTCCAAGCTCATCTC 416
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCGTTTTT-GGCGTCATCGAAATCTCTGGTTTCATATTATTGTCAGTCCAAGCTCATCTC 479
Query 417 CCAGAGCTGAGACCACCAGAATGCAACATGAAGAG---CACAATACATTGCGTAGAGGCA 473
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 CCAGAGCTAAGACCACCAGAATGCAACATGAAGAGCACCACAATACATTGCGTAGAGGCA 539
Query 474 AATGGTTACAAGGCGGTCACTCTCTACGCAGCACTCTGTTTGGTGGCCTTAGGGAGCGGC 533
|||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 540 AATGGTTACAAGGCAGCCACTCTCTACACCGCACTCTGTTTAGTGGCCTTAGGGAGCGGC 599
Query 534 TGCCTTAAACCGAACATTATCTCTCACGGTGCAAACCAGTTTCAAAGGAAGGATTTGAGG 593
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 600 TGCCTCAAACCGAACATCATCTCTCACGGTGCAAACCAGTTTCAAAGGAAAGATTTGAGG 659
Query 594 AAGCTATCTAGTTTCTTCAATGCTGCTTACTTCGCCTTCTCAATGGGTCAGCTTATTGCA 653
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 660 AAGCTCTCGAGTTTCTTCAATGCGGCTTACTTCGCCTTCTCAATGGGTCAGCTTATTGCA 719
Query 654 CTTACACTCTTAGTTTGGGTGCAAACGCATTCCGGCATGGACGTTGGTTTTGGTGTCTCC 713
|| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 720 CTCACACTCTTAGTTTGGGTGCAAACACATTCTGGTATGGACGTTGGTTTTGGTGTCTCC 779
Query 714 GCGGCTGTTATGGCCGCGGGGATGATTAGTCTCGTTGCTGGAACTAACTTTTATAGGAAT 773
|||||||||||||||||||||||||| || || || |||||||||| |||||||||||||
Sbjct 780 GCGGCTGTTATGGCCGCGGGGATGATCAGCCTTGTCGCTGGAACTAGCTTTTATAGGAAT 839
Query 774 AAACCGCCTCGTGGTAGCATCTTCACACCAATTGCTCAGGTCTTCGTAGCCGCGATCACT 833
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAACCGCCTAGTGGTAGCATCTTCACACCAATTGCTCAGGTCTTCGTAGCCGCGATCACT 899
Query 834 AAACGAAAACAGATTTGCCCGTCAAACCCGAACATGCTTCAGCAACCTTCAACGGATCTA 893
|||||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||
Sbjct 900 AAACGAAAACAGATTTGCCCATCAAACCCAAACATGGTTCACCAACCTTCAACGGATCTT 959
Query 894 GTTCGTGTCAAACCACTTCTCCATTCTAACAAATTCAAGTTTCTTGACAAAGCTTGCATC 953
|||||||||||||| || ||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 960 GTTCGTGTCAAACCTCTCCTCCATTCTAATAAATTCAGGTTTCTTGACAAGGCTTGCATC 1019
Query 954 AAGACGCAAGGCAAAGCAATGGAGAGTCCATGGAGACTCTGCACAATCGAACAAGTCCAT 1013
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAGACGCAAGGCAAGGCAATGGAGAGTCCATGGAGACTCTGCACAATCGAACAAGTCCAT 1079
Query 1014 CAAGTCAAGATTCTT-TTATCAGTCATACCGATATTCGCGTGTACTATCATCTTCAACAC 1072
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CAAGTCAAGA-TATTGTTATCAGTCATACCGATATTCGCGTGTACTATCATCTTCAACAC 1138
Query 1073 CATCTTAGCTCAGCTTCAAACTTTCTCTGTTCAGCAAGGAAGTTCTATGAACACACATAT 1132
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1139 CATCTTAGCTCAGCTTCAAACTTTCTCTGTTCAGCAAGGAAGTTCCATGAACACACACAT 1198
Query 1133 TACAAAAACTTTCCAAATACCACCGGCTTCTCTTCAAGCCATTCCTTACATCATTCTCAT 1192
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1199 TACAAAAACTTTCCAAATTCCACCAGCTTCTCTTCAAGCCATTCCTTACATCATTCTCAT 1258
Query 1193 CTTCTTTGTGCCTCTCTACGAAACGTTCTTCGTCCCACTCGCTAGAAAATTCGCGGGAAA 1252
||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||
Sbjct 1259 CTTCTTTGTGCCTCTCTACGAGACGTTCTTCGTCCCACTCGCTAGAAAACTCACGGGAAA 1318
Query 1253 TGATTCCGGAATCTCTCCTCTTCAGAGAATTGGCACTGGACTGTTCTTAGCAACTTTCTC 1312
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CGATTCTGGAATCTCTCCTCTTCAGAGAATTGGCACTGGACTGTTCTTAGCAACTTTCTC 1378
Query 1313 AATGGTTGCAGCTGCTTTAGTGGAAAAGAAGAGACGAGAATCGTTCTTGGAACAGAATGC 1372
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1379 GATGGTTGCAGCCGCTTTAGTGGAGAAGAAGAGACGAGAATCGTTCTTGGAACAGAACGT 1438
Query 1373 AACACTCTCAATCTTTTGGATCGCGCCGCAGTTTCTGATATTCGGTTTATCAGAGATGTT 1432
|| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1439 AATGCTCTCGATCTTTTGGATCGCGCCGCAGTTTCTGATATTTGGTTTATCAGAGATGTT 1498
Query 1433 TACAGCTGTTGGATTAGTGGAGtttttttACAAACAGTCTTCACAGAGTATGCAGTCTTT 1492
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1499 TACAGCCGTTGGATTAGTGGAGTTTTTTTACAAACAGTCTTCACAGAGTATGCAATCTTT 1558
Query 1493 TCTCACAGCAATGACTTACTGTTCTTACTCTTTCGGGTTCTATCTTAGCTCTGTTCTTGT 1552
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1559 TCTCACAGCAATGACATACTGTTCTTACTCTTTCGGGTTTTATCTTAGCTCTGTTCTTGT 1618
Query 1553 CTCGACCGTGAACAGAGTTACTTCTAGTAATGGTTCCGGGACTAAAGAAGGTTGGTTAGG 1612
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1619 CTCGACCGTGAATAGAGTTACTTCTAGTAATGGTTCCGGGACCAAAGAAGGTTGGTTAGG 1678
Query 1613 CGATAACGACCTTAACAAAGATAGATTAGATCACTTTTACTGGCTCTTAGCTTCATTGAG 1672
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1679 CGATAATGACCTTAACAAAGATAGATTAGATCACTTTTACTGGCTTTTAGCTTCATTGAG 1738
Query 1673 TTTCATCAACTTCTTTAACTATCTTTTCTGGTCAAGATGGTATTCGTGTGATCCATCCGA 1732
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1739 TTTCATCAACTTCTTTAATTATCTTTTCTGGTCAAGATGGTATTCGTGTGATCCGTCCGC 1798
Query 1733 GACACATCATAGCGCCGAAGTCAATAGCTTGGAGGATTTAGAAAATGGCGAAAACAAGGA 1792
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1799 GACACATCATAGCGCCGAAGTCAATAGCTTGGAGGCTTTAGAAAATGGCGAAATCAAGGA 1858
Query 1793 TTCCACGACGGAGAAGCCTAGAATTTGACTAA----GTATGTTAGATCATCTTGTTG 1845
|||||||||||||||||||||||||||||||| ||||| |||| ||||||||||
Sbjct 1859 TTCCACGACGGAGAAGCCTAGAATTTGACTAATTAAGTATGGTAGACCATCTTGTTG 1915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91314791355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5