BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922442

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G33490.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   950    0.0  


> AT1G33490.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF2062 (InterPro:IPR018639); 
BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT4G10140.1); Has 88 Blast hits to 88 proteins 
in 29 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi 
- 0; Plants - 54; Viruses - 0; Other Eukaryotes - 6 (source: 
NCBI BLink). | chr1:12150690-12152394 REVERSE LENGTH=897
Length=897

 Score =  950 bits (514),  Expect = 0.0
 Identities = 548/565 (97%), Gaps = 0/565 (0%)
 Strand=Plus/Plus

Query  6    TTTTTTGAAGAATTCTTATGGCGATTTCGAAAGGTAGATTGAAAGCTTGGTTCGATAAGA  65
            ||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  102  TTTGTTGAACAATTCTTATGGCGATTTCGAAAGGTAGATTGAAAGTTTGGTTCGATAAGA  161

Query  66   AGATCAGTGAACCACTTGTCCAGATCTTGCGCAGAGGTGCTGAGCCAAAGCAGCTGGCTT  125
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  162  AGATCAGTGAACCACTTATCCAGATCTTGCGCAGAGGTGCTGAGCCAAAGCAGCTGGCTT  221

Query  126  TTTCTGCGGCATTGGGTATTACCATGGGAGTATTTCCAATCTGCGGTGTTACCGTGTTGC  185
            ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct  222  TTTCTGCGGCATTGGGTATTACCATGGGAGTATTTCCAATCTGTGGTGTTACGGTGTTAC  281

Query  186  TATGTGGAGTGGCTATTGCGTCGCTTGGATCTCTTTGTCATGCTCCAACTGTGATGTTGG  245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  282  TATGTGGAGTGGCTATTGCGTCGCTTGGATCTCTTTGTCATGCTCCAACTGTGATGTTGG  341

Query  246  CTAATTTCATTGCTACTCCAATAGAACTAAGTCTTGTTGTGCCTTTCTTACGACTTGGCG  305
            |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  342  CTAACTTCATTGCTACTCCAATAGAACTAAGTCTTGTGGTGCCTTTCTTACGACTTGGCG  401

Query  306  AAAAAATAACCGGTGGACCTCATTTTCCTTTAACATCTGATGCCCTAAAGAAGGTTTTCA  365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  402  AAAAAATAACCGGTGGACCTCATTTTCCTTTAACATCTGATGCCCTAAAGAAGGTTTTCA  461

Query  366  CAGGCCAAGCTTCCCGAGATGTTTTTATAAGCATTGGAAATGCGCTACTAGGATGGCTCA  425
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  462  CAGGCCAAGCTTCCCGAGATGTTTTTTTAAGCATTGGAAATGCGCTACTAGGATGGCTCA  521

Query  426  TAGCGGCTCCATTTGTGATCGTTGCACTATACATCATGTTTCTCCCATGTTTCAAAATCC  485
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  522  TAGCGGCACCATTTGTGATCGTTGCACTATACATCATGTTTCTCCCATGTTTCAAAATAC  581

Query  486  TTGTCCGCAAATTCAGCTCTGTTGATTCAACCACAAAGACACCTACAAAGGAAAGGATCG  545
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  582  TTGTCCGCAAATTCAGCTCTGTTGATTCAACCGCAAAGACACCTACAAAGGAAAGGATCG  641

Query  546  CTTAAAATCAAACAGTTCTTGGTTT  570
            | |||||| |||||||| | |||||
Sbjct  642  CGTAAAATGAAACAGTTATCGGTTT  666



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27377610115


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5