BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922444
Length=1426
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33520.1 | Symbols: MOS2 | D111/G-patch domain-containing pr... 2200 0.0
AT4G25020.1 | Symbols: | D111/G-patch domain-containing protei... 396 4e-109
> AT1G33520.1 | Symbols: MOS2 | D111/G-patch domain-containing
protein | chr1:12157156-12158953 REVERSE LENGTH=1798
Length=1798
Score = 2200 bits (1191), Expect = 0.0
Identities = 1355/1433 (95%), Gaps = 15/1433 (1%)
Strand=Plus/Plus
Query 4 AGAAGAGAAGGA-TCATCATGAAGCTCTCTTTCTCTCTCCCTTCTAAATCCAAGCCCAAA 62
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 60 AGAAGAGAAGGATTCATCATGAAGCTCTCTTTCTCTCTCCCTTCTAAATCTAAGCCCAAA 119
Query 63 GTCACAGCAACCA---CCGACGCTAACAACGCCGTTGATGACGGAACTAGTAAAGAGTTC 119
||||||||||||| |||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct 120 GTCACAGCAACCACCGCCGACGGTAACAACGCCGTCGATGATGGAACTAGTAAAGAGTTC 179
Query 120 GTCACAGAATTTGATCCATCAAAAACCCTATCTAATTCCATCCCCAAATACGTTATTCCT 179
||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 180 GTCACCGAATTCGATCCATCGAAAACCCTAGCTAATTCCATCCCCAAATACGTTATTCCT 239
Query 180 CCGATTGAGAATACATGGAGACCTCACAAGAAGATGAAGAATCTCGATCTACCTCTTCAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCGATTGAGAATACATGGAGACCTCACAAGAAGATGAAGAATCTCGATCTACCTCTTCAA 299
Query 240 TCCGGTAATACAGGTTCCGGTCTCGAATTCGAGCCTGAGGTTCCTTTACCTGGTCA-TGA 298
|| ||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 300 TCTGGTAACGCAGGTTCCGGACTCGAATTCGAGCCTGAGGTTCCTTTACCTGGT-ACTGA 358
Query 299 GAGACCTGATAACATCACATATGGTTTGAATCTGCGTCAGAAAGTGAAGGAAGATTCAAT 358
|| ||||||||| |||| || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 359 GAAACCTGATAATATCAGTTACGGTTTAAATCTGCGTCAGAAAGTGAAGGATGATTCAAT 418
Query 359 TGGTGGTGATGCGATTGAAGATCGGAAAGTATCTATGGGGGAGCAGCTTATGTTACAAAG 418
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 419 TGGTGGTGATGCGGTTGAAGAGCGGAAAGTATCTATGGGGGAGCAGCTTATGTTACAGAG 478
Query 419 TTTGAGGAAAGATCTGCA-GTCACTTGCTGATGATCCAACTTTGGAGGATTTTGAGAGTG 477
|||||||| ||||||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 TTTGAGGAGAGATCTG-ATGTCACTTGCTGATGATCCGACTTTGGAGGATTTTGAGAGTG 537
Query 478 TTCCTGTGGAAGGTTTTGGAGCTGCGTTGATGGCTGGATATGGATGGAAGCCAGGTAAGG 537
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTCCTGTGGATGGTTTCGGTGCTGCGTTGATGGCTGGATATGGATGGAAGCCAGGTAAGG 597
Query 538 GAATAGGTAAGAATGCTAAAGAAGATGTTGAGATTAAGGAATATAAGAAGTGGACTGCTA 597
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 598 GAATAGGTAAGAATGCTAAAGAAGATGTTGAGATTAAGGAGTATAAAAAGTGGACTGCTA 657
Query 598 AGGAAGGGTTAGGTTTTGATCCTGATAGATCTAAGGTTGTGGATGTGAAGGTTAGAGTGA 657
|||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 658 AGGAAGGGTTAGGTTTTGATCCTGATAGATCTAAGGTTGTTGATGTGAAGGCTAAAGTGA 717
Query 658 AAGAAAGTGTGAAACTTGATAAGAAGGGAGTGGGTGTTAATGGTGGGGATGTGTTTTTTG 717
| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 718 AGGAAAGTGTGAAACTTGATAAGAAGGGAGTAGGTATTAATGGTGGGGATGTGTTTTTTG 777
Query 718 TTGGGAAAGAAGTGAGGATTATTGCAGGGAGAGATGTAGGATTAAAGGGTAAGATTGTGG 777
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 778 TTGGGAAAGAAGTGAGGATTATTGCAGGGAGAGATGTAGGATTGAAGGGTAAGATTGTGG 837
Query 778 AGAAA-CTGGGTAGTGATGTGTTTGTTATGAAGATCTCTGGAAGTGAAGAGGAAGTGAAA 836
||||| || ||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 838 AGAAACCT-GGTAGTGATTTTTTTGTTATAAAGATCTCTGGAAGTGAAGAGGAAGTGAAA 896
Query 837 GTGGGTGTGAATGAGGTTGCTGATTTGGGTTCTAAGGAAGAGGAAAAGTGTTTGAAGAAG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTGGGTGTGAATGAGGTTGCTGATTTGGGTTCTAAGGAAGAGGAAAAGTGTTTGAAGAAG 956
Query 897 TTGAAAGATTTGCAGTTAAATGACAAGGAGAAGGATAAGAAAGCGAGTAGAGGAGGTAGA 956
||||||||||||||||||||||| | |||||||||||||||| ||||| || ||||||||
Sbjct 957 TTGAAAGATTTGCAGTTAAATGATAGGGAGAAGGATAAGAAAACGAGTGGAAGAGGTAGA 1016
Query 957 GGAACGGAGAGAGGGAGTCGAAGTGAAGTTAGAGTCAGTGAGAAGCACGATAGAGGTCAA 1016
||| | |||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1017 GGAGCAGAGAGAGGGAGTCGAAGTGAAGTTAGAGCCAGTGAGAAGCAAGATAGAGGTCAA 1076
Query 1017 ACAAGAGAGAGGAAAGTGAAGCCTTCATGGCTTAGGAGTCATATAAAGGTGCGAATAGTG 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ACAAGAGAGAGGAAAGTGAAGCCTTCATGGCTTAGGAGTCATATAAAGGTGCGAATAGT- 1135
Query 1077 AA-CAAGGAATTGAAAGG-TGGGAGATTGTATCTTAAGAAAGGAAAGGTTGTTGATGTTG 1134
|| ||| || ||| |||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1136 AAGCAAAGA-TTGGAAGGGTGGGAGATTGTATCTTAAGAAAGGGAAGGTTGTTGATGTTG 1194
Query 1135 TTGGACCAACAACTTGTGATATTACGATGGATGAGACACAAGAGTTGGTTCAAGGGGTGG 1194
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1195 TTGGACCAACAACTTGTGATATCACGATGGATGAGACGCAAGAGTTGGTTCAAGGGGTGG 1254
Query 1195 ATCAGGAGTTGCTTGAGACAGCATTGCCTAGACGAGGAGGGCCGGTTTTGGTTTTATCGG 1254
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ATCAGGAGTTGCTTGAGACGGCATTGCCTAGACGAGGAGGGCCGGTTTTGGTTTTATCGG 1314
Query 1255 GGAAGCATAAGGGTGTCTACGGAAATCTTGTTGAGAAAGATTTGGATAAAGAAACTGGTG 1314
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1315 GGAAGCATAAGGGTGTCTATGGAAATCTGGTTGAGAAAGATTTGGATAAAGAAACTGGTG 1374
Query 1315 TGGTTCGTGATTTAGATAACCACAAGATGCTTGATGTTAGACTTGATCAAGTTGCTGAGT 1374
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1375 TGGTTCGTGATTTAGACAACCACAAGATGCTTGATGTTAGGCTTGACCAAGTTGCTGAGT 1434
Query 1375 ACATGGGTGATATGGAGGATATTGAATACTGAA-CTCTCTGTTGAACTGAAGC 1426
|||||||||||||||| ||||||||||||| || |||| || |||||||||||
Sbjct 1435 ACATGGGTGATATGGATGATATTGAATACTAAAACTCTATGGTGAACTGAAGC 1487
> AT4G25020.1 | Symbols: | D111/G-patch domain-containing protein
| chr4:12860634-12861975 REVERSE LENGTH=1342
Length=1342
Score = 396 bits (214), Expect = 4e-109
Identities = 366/439 (83%), Gaps = 12/439 (3%)
Strand=Plus/Plus
Query 953 TAGAGGAACGGAGAGAGGGAGTCGAAGTGAAGTTAGAGTCAGTGAGAAGCACGATAGAGG 1012
||||| ||| ||| ||| |||||| | |||||||| || | || || || || |||||||
Sbjct 718 TAGAGAAACAGAGGGAGAGAGTCGCACTGAAGTTAAAGCCTGTAAGCAGAACTATAGAGG 777
Query 1013 TCAAACAAGAGAGAGGAAAGTGAAG-CCTTCATGGCTTAGGAGTCATATAAAGGTGCGAA 1071
|||||| ||||||| || || |||| || ||||||||||||||||||||||||||| |||
Sbjct 778 TCAAACTAGAGAGACGAGAGAGAAGACC-TCATGGCTTAGGAGTCATATAAAGGTGAGAA 836
Query 1072 TAGTGAA-CAAGGAAT-TGAAAGGTGGGAGATTGTATCTTAAGAAAGGAAAGGTTGT-TG 1128
|| | || ||||| || | |||||||||||||||||||||||||||| | ||| | ||
Sbjct 837 TAAT-AAGCAAGG-ATGTTAAAGGTGGGAGATTGTATCTTAAGAAAGCAGTGGT-GACTG 893
Query 1129 ATGTTGTTGGACCAACAACTTGTGATATTACGATGGATGAGACACAAGAGTTGGTTCAAG 1188
|||| ||||| ||||||| |||||||||| | ||||||||||| || |||||||||||||
Sbjct 894 ATGTGGTTGGGCCAACAAGTTGTGATATTGCTATGGATGAGACGCAGGAGTTGGTTCAAG 953
Query 1189 GGGTGGATCAGGAGTTGCTTGAGACAGCATTGCCTAGACGAGGAGGGCCGGTTTTGGTTT 1248
|| | |||||||||||||||||||| |||||||| || ||||||||| | || ||||||
Sbjct 954 GGATTGATCAGGAGTTGCTTGAGACTGCATTGCCCAGGCGAGGAGGGTCTGTGTTGGTTC 1013
Query 1249 TATCGGGGA-AGCATAAGGGTGTCTACGGAA-ATCTTGTTGAGAAAGATTTGGATAAAGA 1306
| || || | | ||||||||||| || || | | || |||||||||||||||||||| ||
Sbjct 1014 TGTCTGGTAGA-CATAAGGGTGTGTATGGGAGA-CTAGTTGAGAAAGATTTGGATAAGGA 1071
Query 1307 AACTGGTGTGGTTCGTGATTTAGATAACCACAAGATGCTTGATGTTAGACTTGATCAAGT 1366
||||||||||||| | ||| ||||| ||| |||||||| |||||| |||||| |||||
Sbjct 1072 AACTGGTGTGGTTTGCGATGCAGATAGCCAGGAGATGCTTCATGTTAAACTTGACCAAGT 1131
Query 1367 TGCTGAGTACATGGGTGAT 1385
|| |||||||| ||||||
Sbjct 1132 CGCCGAGTACATTGGTGAT 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70280763000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5