BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922446
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64870.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 1842 0.0
> AT5G64870.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr5:25929538-25931384 REVERSE
LENGTH=1754
Length=1754
Score = 1842 bits (997), Expect = 0.0
Identities = 1312/1464 (90%), Gaps = 21/1464 (1%)
Strand=Plus/Plus
Query 17 AAGAATGAGTTACAGAGTCGCTAAACCTTCGGAGTATCTGGCGATCACCGGTGGTGGGAT 76
||||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||||
Sbjct 73 AAGAATGAGTTACAGAGTCGCTAAAGCATCGCAGTATCTTGCGATCACCGGTGGTGGGAT 132
Query 77 CAAAGATATCAAGCTTGCGAAGAAGTCTTGGGTGTTTCCATGGCAGTCTTGCACTGTCTT 136
|| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 133 CACAGACATCAAGCTTGCAAAGAAGTCTTGGGTGTTTCCATGGCAGTCTTGCACCGTCTT 192
Query 137 TGACGTTTCTCCGGTGAACTATACGTTCGATGTT-AAGGCTATGAGTTCCGAGAAACTCC 195
|||||||||||||||||||| |||||||| ||| || |||||||||||||||||||| |
Sbjct 193 CGACGTTTCTCCGGTGAACTACACGTTCGAGGTTCAA-GCTATGAGTTCCGAGAAACTTC 251
Query 196 CCTTTGTTATCCCGGCTGTTTTCACAATCGGCCCGCGTGTTGATGACCCTCACGCTCTGT 255
|||||||||| || ||||||||||||||||| || || |||||||| ||||||||||| |
Sbjct 252 CCTTTGTTATTCCTGCTGTTTTCACAATCGGTCCTCGCGTTGATGATCCTCACGCTCTCT 311
Query 256 TATTGTACGCTATGCTTATGTCTCAACACGACAAGCACTCGAATCACGTCAATGAGCTTG 315
| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 312 TGTTGTATGCCATGCTTATGTCTCAACACGATAAGCACTCGAATCACGTCAATGAGCTTG 371
Query 316 TTCAAGGTGTTATCGAAGGAGAGACTCGTGTTCTCGCTGCCTCCATGACCATGGAAGAAG 375
|||| ||||||||||||||||||||||||||||| | ||| |||||||| |||||||| |
Sbjct 372 TTCAGGGTGTTATCGAAGGAGAGACTCGTGTTCTTGTTGCTTCCATGACTATGGAAGAGG 431
Query 376 TCTTCAAAGGAACAAAGGAGTTCAAGAAAGAAGTGTTTGATAAGGTTCAACTAGAACTAA 435
|||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||
Sbjct 432 TCTTCAAAGGAACAAAGGAGTTTAAGAAGGAAGTGTTTGACAAGGTTCAGCTAGAGCTAA 491
Query 436 ACCAGTTTGGTCTTGTAATTTACAACGCCAATGTGAAGCAGCTTGTTGATGTGCCTGGAT 495
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 492 ACCAGTTTGGTCTTGTGATCTACAACGCCAATGTGAAGCAGCTTGTTGATGTGCCTGGAC 551
Query 496 ATGAGTACTTCTCTTACTTGGGCCAG-AGAACTCAGATGGAAGCAGCAAACCAAGCCAAG 554
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 552 ATGAGTACTTCTCTTACTTGGGCCAGAAG-ACTCAGATGGAAGCAGCAAACCAAGCCAAG 610
Query 555 ATCGATGTAGCAGAGGCACAGATGAAGGGAGAGATAGGTGCCAAAGAACGGACCGGGCTC 614
|||||||||||||||||| |||||||||||||| | |||||||||||| |||| || |||
Sbjct 611 ATCGATGTAGCAGAGGCAAAGATGAAGGGAGAGGTTGGTGCCAAAGAAAGGACTGGACTC 670
Query 615 ACAGTCCAGAATGCAGCAAATATTGACGCTGACTCAAAGATCATATCCACTCAGAGACTA 674
||| ||||||||||||| || ||||||||||| ||||||||||| || ||||| || |||
Sbjct 671 ACAATCCAGAATGCAGCCAAGATTGACGCTGAGTCAAAGATCATCTCTACTCAAAGGCTA 730
Query 675 GG-GCAAGGGACAAAGGAGGAGATTAAGGTGAAGACTGAGGTCAAAGTGTTTGAGAATGA 733
|| | |||||||||| |||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 731 GGAG-AAGGGACAAAAGAGGAGATCAAGGTGAAGACTGAAGTCAAAGTGTTTCAGAATGA 789
Query 734 GAAGGAGGGTCTTGTAGCTGAGGCTGACGCAGCA-TTGGCGATTCAGAAAG-CTGCGTTG 791
||| |||| |||||| ||| ||||||| |||||| ||| ||||||| |||| |||| |||
Sbjct 790 GAAAGAGGCTCTTGTTGCTAAGGCTGATGCAGCACTTG-CGATTCA-AAAGGCTGCTTTG 847
Query 792 TCG-AAGAATTCTCTTCTGGCTGAGGTTGAAGCAGCCAAGGCAGTTGCTTTAAGGGAAGC 850
|| || || |||| | ||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 848 TCCCAA-AACTCTCGTGTGGCTGAGGTTGAAGCAGCCAAGGCTGTTGCTTTGAGGGAAGC 906
Query 851 TGAGCTTCAGACTAAAGTCGAGAAAATGAATGCATTGACTCAGACAGAGAAGCTTAAGGC 910
|||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||
Sbjct 907 TGAGCTTCAGACTAAAGTAGAGAAGATGAATGCATTGACTCGGACAGAGAAGCTTAAAGC 966
Query 911 CGAGTTCTTAAGTAAAGCTAGTGTTGAGTATGAAACTAAGGTACAAGAAGCAAACTGGGA 970
|||||| | |||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 967 TGAGTTCCTCAGTAAAGCCAGTGTTGAGTATGAAACTAAGGTGCAAGAAGCGAACTGGGA 1026
Query 971 GCTATACAATAAGCAAAAGCAAGCGGAAGCAGTTCTTTACGAGAAGGAGAAGCAAGCGGA 1030
| | |||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 1027 GTTGTACAATAAGCAAAAGCAAGCAGAAGCTGTTCTTTACGAGAAGCAGAAGCAAGCGGA 1086
Query 1031 GGCAATGAAAGCTGCGGCTGATGCTATTTTCTATTCGAAACAGAGAGATGCAGAGGGACT 1090
|| | ||||||||| ||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 1087 AGCGACGAAAGCTGCAGCTGATGCTGCCTTCTATTCAAAACAGAAAGATGCAGAGGGACT 1146
Query 1091 TGTCGCTATGGCCAATGCTCTAGGG-ACTTATCTTAGGACCCTCTTAGACGCAGTTGACA 1149
|||||| |||||| |||||| |||| ||||| || | ||||||||||| ||||||| |||
Sbjct 1147 TGTCGCAATGGCCGATGCTC-AGGGGACTTACCTCAAGACCCTCTTAGGCGCAGTTAACA 1205
Query 1150 ATGATTACACAGCTATGAGAGACTTCTTGATGATCAACAATGGTGTTTATCAGGATATTG 1209
|||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1206 ATGATTACTCAGCCATGAGAGACTTCTTGATGATCAACAATGGCATTTATCAGGATATTG 1265
Query 1210 CCAAGAACAACGCGGTTGCAATCAGAGACTTGCAGCCTAAAATCAGTGTTTGGAACCATG 1269
|||||| ||| || ||||| ||||| ||| |||||||||| ||||| || ||||||||||
Sbjct 1266 CCAAGACCAATGCTGTTGCGATCAGGGACCTGCAGCCTAAGATCAGCGTGTGGAACCATG 1325
Query 1270 GTGGTGCTAATCAGGGGATGAATGGTGGTGGTAATGGTAATGCTATGAATGATATTGCTG 1329
|||||||| | ||||||||||| ||||||||||| | || | ||||| ||||||||||
Sbjct 1326 GTGGTGCTGAGCAGGGGATGAACGGTGGTGGTAAAGCTAC-G--ATGAACGATATTGCTG 1382
Query 1330 GACTGTACAAGATGTTGCCACCGATTCTTGAAACGGTTTATCATCAGACCGGAATGCAGC 1389
|||| ||||||||||| |||||| ||||||| ||||||||| | ||||| || |||||||
Sbjct 1383 GACTCTACAAGATGTTACCACCGGTTCTTGATACGGTTTATGAGCAGACAGGGATGCAGC 1442
Query 1390 CACCGGCTTGGATTGGTACACTAG-GTGGTGCTGAACCCAAACAATCACTTC-TGGCTCT 1447
|||| ||||||||||||||| | | |||||||||| |||||||||||||||| || |||
Sbjct 1443 CACCAGCTTGGATTGGTACATT-GCGTGGTGCTGAGCCCAAACAATCACTTCATG-CTCA 1500
Query 1448 ACAACAAAGAGGTTGAGATCTCAA 1471
|||||| |||||||||||||||||
Sbjct 1501 ACAACACAGAGGTTGAGATCTCAA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73142194065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5