BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922450

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42620.1 | Symbols: MAX2, ORE9, PPS | RNI-like superfamily p...   457    4e-128


> AT2G42620.1 | Symbols: MAX2, ORE9, PPS | RNI-like superfamily 
protein | chr2:17756140-17758468 FORWARD LENGTH=2329
Length=2329

 Score =  457 bits (247),  Expect = 4e-128
 Identities = 300/325 (92%), Gaps = 5/325 (2%)
 Strand=Plus/Minus

Query  24    GTAATCAACTTACAACATCCTCTCCCTATAGCCACCAAACCCATATTGGTCAAATCGCCG  83
             ||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct  1160  GTAGTCAACTTACAACATCCTCTCCCTATAGCCACCAAACCCATATCAGTCAAATCGCCG  1101

Query  84    GAATTCTTAATCGACAACGACTGCAATCCTCCACATAGAGCCACGCCGTCGAACCTCCTC  143
             ||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct  1100  GAATTCTTAATCGACAACGACTGCAATCCTCCACATAAAGCCACACCGTCGAGCCTCCTC  1041

Query  144   TATTCTATAGTAGAGCAAACATCTTGGAACTGTCCTAGCTTCAATGTTCTTAGCTTCTTG  203
              ||||| ||| |||||||||| |||||||||||||||||||||||  ||||| |||||||
Sbjct  1040  CATTCTGTAGCAGAGCAAACACCTTGGAACTGTCCTAGCTTCAATACTCTTAACTTCTTG  981

Query  204   GATTTAGAATTCTATGTCTCTAAAGCTACACCACTATGCTTCACATCACATCCTTCCCTA  263
              ||||||||||| ||| |||||||||||||||||||||||||||||| | |  |||| ||
Sbjct  980   CATTTAGAATTCAATGCCTCTAAAGCTACACCACTATGCTTCACATC-C-T--TTCC-TA  926

Query  264   CGTCAAGAACCAGCTCCTCTAGATTCGGTAAACCAGAGAAAACCTCAATTAGCATCCCCG  323
             |||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct  925   CGTCAAGAACCAGCTCCTCTAGATTCGGTAAACCTGAGAAAACTTCAATTAGCGTCCCCG  866

Query  324   CCGTGACAGCTGAATCTCCACCTTC  348
             |||||||||||||||||||| ||||
Sbjct  865   CCGTGACAGCTGAATCTCCAGCTTC  841



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16337018425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5