BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922461
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33670.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1493 0.0
AT1G33590.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 440 2e-122
> AT1G33670.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:12201963-12203408 FORWARD LENGTH=1446
Length=1446
Score = 1493 bits (808), Expect = 0.0
Identities = 1221/1415 (86%), Gaps = 49/1415 (3%)
Strand=Plus/Plus
Query 22 ATGAACTCTTATTCCTTCCCTCTCTTCATCTTTGTCGCGGTCTTTATCTTTCTCCGGTGT 81
|||||||||| |||||||||||||||| || || | | |||||||||||||||||
Sbjct 1 ATGAACTCTTGTTCCTTCCCTCTCTTCCTC-TT-T----G---TTATCTTTCTCCGGTGT 51
Query 82 TTAAGTTCCACGGGAGCTGCCACATGTCATCCTGATGACGAGGCAGGTCTTTTAGCTTTC 141
||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 52 TTAAGTTCCACGGGAGCTGCCACATGTCATCCTGATGACAAAGCGGGTCTTTTAGCTTTC 111
Query 142 AAATCAGGTATAACCCAAGATCCTTTGGGTATTCTCAGCTCCTGGAAGAAA-AGTACTAA 200
||||| ||||||||||||||||||| ||||||||||||||| ||| ||||| | || | |
Sbjct 112 AAATCGGGTATAACCCAAGATCCTTCGGGTATTCTCAGCTCATGGCAGAAAGA-TATTGA 170
Query 201 CTGCTGCTCCTGGTATGGTGTCTTTTGCCTCCCTGTTAACCCCGGCAACCGCGTCACCAT 260
||||||||||||||| ||| |||||||||||||| | | ||| |||||||||||||
Sbjct 171 CTGCTGCTCCTGGTACGGTATCTTTTGCCTCCCTACGATTCATGGCGACCGCGTCACCAT 230
Query 261 -ACTGGCACTAGATGGAAATACAGAT-TCTGGCAAAACTTTTCTCTCCGGCACTATCTCG 318
| ||||| |||| |||||||| ||| | ||| |||| ||||||||||||||||||||
Sbjct 231 GA-TGGCATTAGACGGAAATACGGATGT-TGGTGAAACCTTTCTCTCCGGCACTATCTCA 288
Query 319 CCGTTGCTAGCTAAGCTCCAGCACCTCAACGAGATTCGCCTCACCGATCTTCGAAAGATC 378
|||||||| || || ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 289 CCGTTGCTCGCCAAACTCCATCACCTCAACGAGATTCGCCTCACCAATCTTCGAAAGATC 348
Query 379 ACTGGATCTTTTCCCCAATTCCTTTTCAAATTACCAAAGCTAAAGATTGTTTACTTAGAG 438
||||||||||||||||| ||||| ||||||||||||||||||| || |||||||||||||
Sbjct 349 ACTGGATCTTTTCCCCACTTCCTCTTCAAATTACCAAAGCTAAGGACTGTTTACTTAGAG 408
Query 439 AATAACCGTCTCTCTGGTCCCCTTCCGGACAACATCGGTGCATTAAGTAAGTTGGAAACT 498
|||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||||| |
Sbjct 409 AATAACCGTCTCTCTGGTCCCCTTCCTGCCAACATCGGTGCACTAAGTAATTTGGAAA-T 467
Query 499 TTT-AGTCTGGAGGGAAACCGGTTCACCGGTCCGATCCCGAGTTCGATTTCCAATTTTAC 557
||| ||| ||| |||||||||||||| |||| ||||||| |||||||| || || || ||
Sbjct 468 TTTGAGTGTGGCGGGAAACCGGTTCAGCGGTTCGATCCCAAGTTCGATGTCTAAGTTAAC 527
Query 558 TAGATTACTCCAACTCAAACTCAACGGTAACCGCTTTTCTGGCATCATCCCTGATATATT 617
||| |||||||||||||| ||||||||||||||| ||||||||||| |||| || |||||
Sbjct 528 TAGCTTACTCCAACTCAAGCTCAACGGTAACCGCCTTTCTGGCATCTTCCCAGACATATT 587
Query 618 CAAATCCATGCGACAACTCC-ATTATCTCGATCTCTCCCAG-AACAGAATCTCTGGAAAA 675
|||||||||||| ||||| | ||| ||| ||||||||| || |||||| ||||||||||
Sbjct 588 CAAATCCATGCGGCAACTTCGATT-TCTTGATCTCTCC-AGCAACAGATTCTCTGGAAAC 645
Query 676 CTTCCTTCATCGATTGCATCTCTTGCACCGACTCTTTGGGCTCTTGAGGTGGGCCAGAAC 735
||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 646 CTTCCTTCATCGATTGCATCTCTTGCACCGACTCTTTCTACCCTTGAGGTGGGCCATAAC 705
Query 736 AATCTATCGGGGACTATCCCAGACTATTTATCGAGATTCGAGCT-CT-T--GTCATTAAA 791
|| ||||||||||||||||| ||||||||||||||||||||||| || | | |||||||
Sbjct 706 AAGCTATCGGGGACTATCCCGGACTATTTATCGAGATTCGAGCTTCTCTCCG-CATTAAA 764
Query 792 TCTCTCCAGGAATTGCTACACAGGTGTCGTGCCGATGAGTTTCACCAATCTTACTAGACT 851
|||||| |||||| | |||||||| ||||||||||||||||| ||||||| || | ||
Sbjct 765 TCTCTCTAGGAATGGGTACACAGGGGTCGTGCCGATGAGTTTTGCCAATCTGACCA-ACA 823
Query 852 TTA-CAATCTCGATCTCTCCCACAATCAT-CTAACTGGTCCACTCCCTGTCATGAACTCC 909
||| | ||| |||||||||||||||| | || || |||||| |||||||| |||||||
Sbjct 824 TTATCTTTCTTGATCTCTCCCACAATC-TGCTTACCGGTCCATTCCCTGTCTTGAACTCA 882
Query 910 TCAGACATAGAATATCTACATCTCTCGTACAACCGATTTCACCTT-AAAGCAATTCCCAA 968
| || ||| |||||||||||||| ||||||||||||||||||||| ||| |||| ||| |
Sbjct 883 TTAGGCATCGAATATCTACATCTTTCGTACAACCGATTTCACCTTGAAA-CAATCCCCGA 941
Query 969 ATGGGTGACCTCGTCGAGGCTCATGTACTCGTTGAAGCTAGCAAAATGTGGGATCAAGAT 1028
||||||||||| ||||| | |||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 942 ATGGGTGACCTTGTCGAAGTTCATCTACTCATTGAAGCTTGCAAAATGTGGGATCAAAAT 1001
Query 1029 GAGCTTAGACGATTGGAAGCCAT-A--CAGCT-TTTCGTACAATCACATGGATTTGTCAG 1084
|||||||||| |||||| |||| | || || |||| ||| ||||||| ||||| || |
Sbjct 1002 GAGCTTAGACCATTGGATGCCAGCAGACACCTCTTTC-TACCATCACATTGATTTTTCGG 1060
Query 1085 AAAACAAAATCTCAGGGAGTCCAGCAAGGTTTTTGAACAAGATGGCTTTTTTGACTG-AG 1143
||||| | ||||||||||||||| ||||||||| ||| |||||| |||| || || ||
Sbjct 1061 AAAACGAGATCTCAGGGAGTCCAATAAGGTTTTTTAACCAGATGGATTTTATGG-TGGAG 1119
Query 1144 TTCCACGCAGCGGGGAACAAACTTC-GATTCGACTTGGGGAAAC-AGAATTTTGGGATCT 1201
||||| ||| ||||||||||||| | | |||||||||||||| | | || ||||| ||||
Sbjct 1120 TTCCATGCACCGGGGAACAAACTCCAG-TTCGACTTGGGGAAGCTA-AAGTTTGGAATCT 1177
Query 1202 TCTTGACAACCCTGGATCTGTCAAGGAACTTGATATTTGGGAACGTACCCGCGACGCTGA 1261
|||||| |||||||||| |||||||||||||| |||||||||| ||||| | |||| |||
Sbjct 1178 TCTTGAAAACCCTGGATTTGTCAAGGAACTTGGTATTTGGGAAGGTACCGGTGACGGTGA 1237
Query 1262 TCAGATTGCAGACATTGAACTTGAGTCAAAATCATCTTTGCGGAAAGCTTCCGGT-GACA 1320
|||| |||||||| | |||||||||||||| |||||||||||||||||||| | ||||
Sbjct 1238 CCAGACTGCAGACACTAAACTTGAGTCAAAACCATCTTTGCGGAAAGCTTCCA-TCGACA 1296
Query 1321 AAGTTCCCGGCCAGCGCGTTTG-CGGGTAACGACTGTCTTTGCGGCTTTCCACTTTATCC 1379
||||||||||| || || |||| || |||| | |||||||||||||||||||||| |||
Sbjct 1297 AAGTTCCCGGCTAGTGCTTTTGTCGA-TAACAAGTGTCTTTGCGGCTTTCCACTTTCTCC 1355
Query 1380 GTGTAAAGCTTAGGGGCAATAAAA-CTACATTTTT 1413
|||||||||||||| ||| |||| | ||| ||||
Sbjct 1356 TTGTAAAGCTTAGGGACAAGAAAAGC-ACAGTTTT 1389
> AT1G33590.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:12177777-12179413 FORWARD LENGTH=1637
Length=1637
Score = 440 bits (238), Expect = 2e-122
Identities = 659/856 (77%), Gaps = 53/856 (6%)
Strand=Plus/Plus
Query 583 GGTAACCGCT-TTTCTGGCATCATCCCTGATATATTCAAATCCATGCGACAACTCCATTA 641
|||||||| | | |||| | ||| || ||||| ||||||||||||| | | |||| |
Sbjct 630 GGTAACCG-TCTCACTGGAACCATTCCAGATATTTTCAAATCCATGCCAGAGCTCC--GA 686
Query 642 TC-TCGA-TCTCTCCCAG-AACAGAATCTCTGGAAAACTTCCTTCATCGATTGCATCTCT 698
|| | | |||||||| | ||| || |||| || || |||||| | || |||||||| ||
Sbjct 687 TCTTTAACTCTCTCCC-GCAACGGATTCTCCGGGAATCTTCCTCCGTCCATTGCATCACT 745
Query 699 TGCACCGACTCTTTGGGCT-CTTGAGGTGGGCCAGAACAATCTATCGGGGACTATCCCAG 757
||||||| || || || | || ||| | ||||| ||||| || || ||||| || |||
Sbjct 746 CGCACCGATTC-TTAGGTTCCTCGAGTTAGGCCATAACAAACTCTCCGGGACGATTCCAA 804
Query 758 ACTATTTATCGAGA-TTCGA-GCTCTTG--TCATTAAATCTCTCCAGGAATTGCTACACA 813
||| |||||| | | ||| | || || | |||| ||||||||| |||| | | | |
Sbjct 805 ACTTTTTATC-AAACTTCAAGGCGCTCGACACATTGGATCTCTCCAAGAATCGGTTCTCG 863
Query 814 GGTGTCGTGCCGATGAGTTTCACCAATCTTA-CTAGACT-TTACAATCTCGATCTCTCCC 871
|||||| | |||| ||||||| ||||||| | | ||| | || |||||| ||||||||||
Sbjct 864 GGTGTCATACCGAAGAGTTTCGCCAATCTGACCAAGA-TATT-CAATCTTGATCTCTCCC 921
Query 872 ACAATCATCTAACTGGTCCACTCCCTGTCATGAACTCCT-CAGACATAGAATATCTACAT 930
| |||| |||||| | |||| |||||||| ||||| | || ||| |||| | | ||
Sbjct 922 ATAATCTTCTAACCGATCCATTCCCTGTCTTGAAC-GTTAAAGGCATTGAATCTTTGGAT 980
Query 931 CTCTCGTACAACCGA-TTTCACCTT-AA-AGCAATTCCC-AAATGGGTGACCTCGTCGAG 986
|| || ||||||| | ||||| ||| || | | | |||| ||||||||||| ||||||
Sbjct 981 CTTTCTTACAACC-AGTTTCA-CTTGAATA-CGA-TCCCGAAATGGGTGACTTCGTCGCC 1036
Query 987 GCTCATGTACTCGTTGAAGCTAGCAAAATGTGGGATCAAGATGAGCTTAGACGATTGGAA 1046
| |||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1037 GATCATCTTCTCGTTGAAGCTAGCAAAATGCGGGATCAAGATGAGCTTAGACGATTGGAA 1096
Query 1047 GCCATA-CAG-CTTTTCGTACAATCA---CATGGATTTGTCAGAAAACAAAATCTCAGGG 1101
|||| || | || | ||| || | ||| ||| |||| |||||| | ||| |||||
Sbjct 1097 GCCAGCGCAAACATT-C-TACTATGATTTCATCGATCTGTCGGAAAACGAGATCACAGGG 1154
Query 1102 AGTCCAGCAAGGTTTTTGAAC-AAGATGGCTTTTTTGACTG-AGTTCCACGCAGCGGGGA 1159
|||||||||||||| |||||| || | | | | | | || ||||| | |||||||| |
Sbjct 1155 AGTCCAGCAAGGTTCTTGAACCAA-ACAGAGTATCT-AGTGGAGTTCAAGGCAGCGGGTA 1212
Query 1160 ACAAACTTCGATTCGACT-TGGGGAAACAGAAT-TTTGG---GATCTTCTTGACAACCCT 1214
||||||| |||||||| | ||||||| | || |||| || | || |||||| |
Sbjct 1213 ACAAACTACGATTCGA-TATGGGGAAGCT-AACGTTTGCAAAGA-CG-CT-GACAACTTT 1267
Query 1215 GGATCTGTCAAGGAACTTGATATTTGGGAACGTACCCGCGACGCTGATCAG-ATTGCAGA 1273
||| | |||||||||||| |||||||||| || || || | | || | | | | |||
Sbjct 1268 AGATATATCAAGGAACTTGGTATTTGGGAAGGTGCCGGCAATGGTGG-CTGGACTAAAGA 1326
Query 1274 CATTGAACTTGAGTCAAAATCATCTTTGCGGAAAGCTTCCGGTGACAAAGTTCCCGGCCA 1333
|||||||| ||||||| || |||||||| ||||||||||| || ||||||||||||||||
Sbjct 1327 CATTGAACGTGAGTCACAACCATCTTTGTGGAAAGCTTCCAGTAACAAAGTTCCCGGCCA 1386
Query 1334 GCGCGTTTGCGGGTAACGACTGTCTTTGCGGCTTTCCACTTTATCCGTGTAAAGCTTAGG 1393
| ||||||| |||||| |||||||||||||||| ||| |||| ||| ||||||||||| |
Sbjct 1387 GTGCGTTTGTGGGTAATGACTGTCTTTGCGGCTCTCCTCTTTCTCCTTGTAAAGCTTAAG 1446
Query 1394 -GGCAATAAAACTACA 1408
||||| ||| |||||
Sbjct 1447 CGGCAAGAAAGCTACA 1462
Score = 303 bits (164), Expect = 2e-81
Identities = 444/574 (77%), Gaps = 39/574 (7%)
Strand=Plus/Plus
Query 18 CACAATGAACTCTTATTCCTTCCCTCTCTTCATCTTTGTCGCGGTCTTTATCTTTCTCCG 77
||| |||||||| |||||| |||||||||||||| | | || | ||||| ||||
Sbjct 8 CACCATGAACTC---TTCCTTTACTCTCTTCATCTTT-AC-C-TTCGTCATCTTCCTCCA 61
Query 78 GTGTTTAAGTTCCACGGGAGCTGCCACATGTCATCCTGATGACGAGGCAGGTCTTTTAGC 137
||| ||| | |||| ||||||||||| |||||||||||||| || || |||||| ||||
Sbjct 62 ATGTCTAAATCCCACCGGAGCTGCCACGTGTCATCCTGATGATGAAGCGGGTCTTCTAGC 121
Query 138 TTTCAAATCAGGTATAACCCAAGATCCTTTGGGTATTCTCAGCTCCTGGAAGAAAAGTAC 197
||||||| | |||||||||| |||||||| |||||||||||| || ||||||||| ||||
Sbjct 122 TTTCAAAGCGGGTATAACCCGAGATCCTTCGGGTATTCTCAGTTCTTGGAAGAAAGGTAC 181
Query 198 TAAC-TGCTGCTCCTGGTATGGTGTCTTTTGCCTCCCTGTTAACCCCGGCAACCGCGTCA 256
| || || || ||| | |||||| ||| | | | ||| | | |||| |||
Sbjct 182 -CGCTTGTTGTTCTTGGAACGGTGTCACTTG--T--C---TCACCACTG--ACCGTGTCT 231
Query 257 CCATACTGGCACTAGATGGA-AATACAGA--TT-CTGGCAAAACTTTTCTCTCCGGCACT 312
| ||| | | | |||| || | || || |||| || | || ||||||||||||
Sbjct 232 CTGCACTCTCTGTCGCTGGACAA-GCCGATGTTGCTGG--AAGC-TTCCTCTCCGGCACT 287
Query 313 ATCTCGCCGTTGCTAGCTAAGCTCCAGCACCTCAACGAGATTCGCCTCACCGATCTTCGA 372
||||||||| | | ||||| ||| ||||||| | | |||| | ||||||||| || |
Sbjct 288 CTCTCGCCGTCGTTGGCTAAACTCAAGCACCTTGATGGGATTTACTTCACCGATC-TCAA 346
Query 373 -AAGATCACTGGATCTTTTCCCCAATTCCTTTTCAAATTACCAAAGCTAAAGAT-TGTTT 430
|| |||||||| |||||||| |||||||||||| |||||||||| || ||| | || |
Sbjct 347 GAACATCACTGGTTCTTTTCCTCAATTCCTTTTCCAATTACCAAATCTTAAG-TACGTAT 405
Query 431 AC-TTAGAGAATAACCGTCTCTCTGGTCCCCTTCCGGAC-AACATCGGTGCATTAAGTAA 488
|| || ||||||||||||||||||||| | ||||||| | ||||||||||| |||| |
Sbjct 406 ACATT-GAGAATAACCGTCTCTCTGGTACTCTTCCGG-CTAACATCGGTGCGCTAAGCCA 463
Query 489 G-TTGGAAACTTTTAGTCTGGAGGGAAACCGGTTCACCGGTCCGATCCCGAGTTCGATTT 547
| || ||| | || || || |||||||||||||||||||||||||||||||| ||||| |
Sbjct 464 GCTT-GAAGCGTTCAGCCTCGAGGGAAACCGGTTCACCGGTCCGATCCCGAGCTCGATAT 522
Query 548 CCAATTTTACTA-GATTA-CTCCAACTCAAACTC 579
| ||||| ||| | ||| ||| |||||||||||
Sbjct 523 CTAATTTGACTCTG-TTAACTC-AACTCAAACTC 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5