BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922465 Length=1260 Score E Sequences producing significant alignments: (Bits) Value AT1G32660.1 | Symbols: | F-box and associated interaction doma... 739 0.0 AT1G33743.1 | Symbols: | Pseudogene of AT1G32660; F-box family... 544 1e-153 AT1G31620.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 73.1 6e-12 > AT1G32660.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:11811040-11812380 FORWARD LENGTH=1341 Length=1341 Score = 739 bits (400), Expect = 0.0 Identities = 980/1247 (79%), Gaps = 92/1247 (7%) Strand=Plus/Plus Query 35 AAGAATGAGAAAG-ACACAACAAACCCTAGTAAGTTAGACTTATTAGATTCGCTCCCTCT 93 ||| ||||||||| | || |||||||||||||||||||| ||||||||||| ||||| Sbjct 140 AAG-ATGAGAAAGAAGAC-ACAAACCCTAGTAAGTTAGA---GTTAGATTCGCTGCCTCT 194 Query 94 TGATCTAAAGATGGCTATACTAACTAGATTGTCTGCCAAGTCTCTAAAGAATTTTCGATG 153 ||| ||||||||||| ||||| |||||| | ||||||||||||| | ||| || ||||| Sbjct 195 TGACCTAAAGATGGCGATACTGACTAGAATCCCTGCCAAGTCTCTTATGAAGTTGCGATG 254 Query 154 CGTGTCAAAGATGTGGTCTTCCATCATCCGAAGCCGAGGATTCATTGATTCCTTCTTCTC 213 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | | Sbjct 255 CGTGTCAAAGATGTGGTCTTCCATCATCCGAAGCCGAGGTTTCATTGATTCCTACTACGC 314 Query 214 TATGTCCGCAAAGCAATCACGGTTTATAGTCAGTTT-ATGTAACATTGTATTCGGTGAGC 272 ||| ||| | ||||||||||||||||||||| |||| | ||||| || ||| |||| Sbjct 315 TATCTCCTCGAAGCAATCACGGTTTATAGTCGGTTTGA-GTAACGCTGCATTTAACGAGC 373 Query 273 CTGAGGAGAAGCTTATCTTATTCTTCTCGTTTTCACACGACGAGGGAGATGA-Gtcttct 331 ||||| || |||||| ||| ||||||||||||| ||||| || ||||| || ||||||| Sbjct 374 CTGAGAAGCAGCTTACCTTCCTCTTCTCGTTTTCCCACGAAGACGGAGA-GAAGTCTTCT 432 Query 332 tcttcttcttcttTGGTACCCAATTTCGAGATGGCTCTTCCTGCTGTGAGCTTTAGTTT- 390 |||||||||| | ||||||||| ||||||||||| |||| ||| ||||| || | Sbjct 433 TCTTCTTCTT-T--GGTACCCAACTTCGAGATGGCAGTTCC--CTGC-AGCTT-AGCTGG 485 Query 391 C-TACTCAGGGTCTT-GCGCTTCTTTACATGGCATTCTCACTGTTGAAACTGAAGGTCAG 448 | | |||| |||| | |||||||| |||||||||||| |||||||| | | | || Sbjct 486 CCT-CTCACACTCTTTG-GCTTCTTTCCATGGCATTCTCGCTGTTGAA---G--G-TAAG 537 Query 449 TTGATGATGTGTAACCCTAGCACCGAGCAAGTCGTTAAGTTAACTAGT-GACTGTATTTT 507 | ||||||||||||||| ||| |||||| || || |||| | || | | || || Sbjct 538 --G-TGATGTGTAACCCTAACACGGAGCAATTCACTACGTTACCC-GTTGGCACCATCTT 593 Query 508 TGTTGGTTACGATCCGATTGATGATCAATACAAAGTATTATCCTGGGATAAC-ATAATTT 566 ||| || |||||||||||||| ||||||||||||| | || ||| |||| Sbjct 594 TGTGGGGTACGATCCGATTGACGATCAATACAAAGCGCTCGGCTTTGATTTTGATAA--- 650 Query 567 GGGAGG--ATCCTAATGCTCACCTAAAGCACAAGGTATTA-ACATTGGGAGATGGTCAAG 623 | || | || ||||||| | | |||||||| || |||||||||| |||| ||| Sbjct 651 GAGATGTCATGGTAATGCT-AT-TGGT-CACAAGGT-TTGGACATTGGGAGGTGGTGAAG 706 Query 624 GA-TGGAGACACATTAAAAAT-ACCACTTT-ACCTTATATGGC-GATA-T-C-ACCAAAT 676 || || ||||| |||| | | ||| || |||||||| | | |||| | | ||||||| Sbjct 707 GAATG-AGACAGATTAGAGGTGACC--TTGCACCTTATA-GACCGATACTACTACCAAAT 762 Query 677 GTATGCATCAACGGTTTTCTCTACTATGGTGCGT-ATTGCTTAACACAAACTAGAGATCC 735 ||||||||||||||| || ||||||||||||| | || |||| | ||||| | |||||| Sbjct 763 GTATGCATCAACGGTGTTATCTACTATGGTGC-TCATACCTTATCCCAAACCAAAGATCC 821 Query 736 AGTTATGGTGTGTTTTGATGTTAGATCTGAGAAACTAAGTTTTATCAAAGCGCCTCCGGT 795 |||||| |||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 822 AGTTATTGTGTGTTTTGATGTTAGATCTGAGAAACTAAGTTTTATCACTGCACCTGCGGT 881 Query 796 TGTCCTCCAATGGGGGAAGGAAG-C-AGTGTTCATAGAATACAAAGGGAAGCTAGCTTCC 853 ||||||||||| ||||| | ||| | | | ||||||| |||||||||||||||||||| Sbjct 882 TGTCCTCCAATCGGGGATG-AAGTCTA-TACTCATAGACTACAAAGGGAAGCTAGCTTCT 939 Query 854 ATTGTGGGAAACACTTATGGAGCT-GTCTCT--AGTTTTGATTTATGGATACTAGAAGAC 910 |||||| ||||| | | ||| | | || || ||||||| ||| ||||||||||||||| Sbjct 940 ATTGTGAGAAACTCCTGTGGTGGTTGTATCAGCAGTTTTGTTTTTTGGATACTAGAAGAC 999 Query 911 GTTGAGAAACATGAATGGTCAAAACAAAAATGTG-TGTTTCC-TATCTCTGTGTGGGAtt 968 |||||||||||||||| | |||| |||| | ||||| || |||| ||||||||| Sbjct 1000 CCCAAGAAACATGAATGGTCTAGGCAAAGTTGTGAT-TTTCCCTA-CTCTCTGTGGGATT 1057 Query 969 tttttGACCTTGGTG-GAATGTCTTT-TCCAGGTACAAATAGGGCTGGTGAGATCATCAT 1026 | ||| || | |||| | ||| | || || || | ||||||||||||||| || Sbjct 1058 ATGTTGGGAATG-TCAGAATATGTTTCTTT-GGCACCAACAAGGCTGGTGAGATCATTAT 1115 Query 1027 GGCTCCAA-GTTTGTTGTCA-GTCAATCTTCAACCCTTCTATATTTTCTACTACAATGTT 1084 || |||| |||| |||||| | | || ||| ||||||| ||||||||||| |||||| Sbjct 1116 TGCCCCAATGTTT-TTGTCACG-CGATGTTCGGTCCTTCTACATTTTCTACTATAATGTT 1173 Query 1085 GAAACAAAAAACATAAGAAGAGTTAGGCTCCTAGGAATTGGA-GAC-AGTGA-AGAGTTT 1141 |||||||||| ||| |||||||||||||||| |||||||||| | | | | | ||||||| Sbjct 1174 GAAACAAAAACCATGAGAAGAGTTAGGCTCCGAGGAATTGGAAG-CGA-T-ATAGAGTTT 1230 Query 1142 AGGCGCTCTTATGGATTCGGGGAGCACGCTA---AA--GCTTTTGTCAATATCGCACATC 1196 |||||||||||||||| || | || | | || || | ||| ||||||||||| Sbjct 1231 AGGCGCTCTTATGGATCCGAAAA-CAAGTTGTGTAATTGCCAT-GTCCGTATCGCACATC 1288 Query 1197 AACACGTCGAGAGCATTGCCTTCTTTAA-GGATCCTTTTA-TTTAAG 1241 ||||||| ||||| |||||||| ||||| ||||| | | | |||||| Sbjct 1289 AACACGTTGAGAGTATTGCCTT-TTTAAAGGATCATATAAATTTAAG 1334 > AT1G33743.1 | Symbols: | Pseudogene of AT1G32660; F-box family protein | chr1:12231684-12232532 FORWARD LENGTH=849 Length=849 Score = 544 bits (294), Expect = 1e-153 Identities = 723/913 (79%), Gaps = 97/913 (11%) Strand=Plus/Plus Query 348 TACCCAATTTCGAGATGGCTCTTCCTGCTGTGAGCTTTAGTTTCTACTCAGGGTCTTGCG 407 |||||||||| ||||| ||| |||| ||||||||||||||||| | ||||||||||||| Sbjct 2 TACCCAATTTTGAGAT-GCT-GTCCTTCTGTGAGCTTTAGTTTCCATTCAGGGTCTTGCG 59 Query 408 CTTCTTTACATGGCATTCTCACTGTTGAAACTGAAGGTCAGTTGATGATGTGTAACCCTA 467 ||| ||| |||||||||||| | ||||| ||||||||| ||||||||||| |||||||| Sbjct 60 CTTATTTCCATGGCATTCTCGTTATTGAAGCTGAAGGTCGGTTGATGATGTATAACCCTA 119 Query 468 GCACCGAGCAAGTCGTTAAGTTAACTAGTGACTG-TATTTTTGTTGGTTACGATCCGATT 526 | ||||||||| || |||||||| |||| || | || |||||||||||||||||||||| Sbjct 120 GAACCGAGCAATTCATTAAGTTACCTAG-AACCGCTACTTTTGTTGGTTACGATCCGATT 178 Query 527 GATGATCAATACAAAGTATTATCCTGGGATAACATAATTTGGGAGGATCCTAATGCTCAC 586 |||||||| ||||||| | |||| | |||| |||| || || ||| Sbjct 179 GATGATCAGTACAAAG---------G--ATAA--TG----GGGATGATCGTAGTGGTCAT 221 Query 587 CTAAAGCACAAGGTATTAACATTGGGAGATGGTCAAGGATGGAGACACATTAAAAATACC 646 |||||||||||||| |||||||| |||| || |||||||||||||||||||||||||||| Sbjct 222 CTAAAGCACAAGGTGTTAACATTAGGAGGTGTTCAAGGATGGAGACACATTAAAAATACC 281 Query 647 -ACTTTACCTTATATGGCG-ATATCACCAAATGTATGCATCAACGGTTTTCTCTACTATG 704 | ||||||||| | | | |||| ||| ||||||||||||||||||||||||||||||| Sbjct 282 TA-TTTACCTTAGA-GAAGGATATAACCGAATGTATGCATCAACGGTTTTCTCTACTATG 339 Query 705 GTGCGTATTGCTTAACACAAACTAGAGATCCAGTTATGGTGTGTTTTGATGTTAGATCTG 764 || ||| |||| |||| | | | || |||| | || | || | Sbjct 340 GT----ATT--TTAATACAACC-A-A-AT---GTTA-G----------ATCT--GA---G 371 Query 765 AGAAACTAAGTTTTATCAAAGCGCCTCCGGTTGTCCTCCAATGGGGGAAGGAAGCAGTGT 824 | || |||||||||||||| || ||| | |||||||| |||||||||||||| | | | | Sbjct 372 A-AA-CTAAGTTTTATCAATGCACCTGCTGTTGTCCTGCAATGGGGGAAGGACGAAATAT 429 Query 825 TCATAGAA-TACA-AA--G---GG-AAGCTAGCTTCCATTGTGGGAAACACTTATGGAGC 876 |||||||| || | || | || || ||||||||||||||| ||||| |||||||||| Sbjct 430 TCATAGAAATATAGAATAGAAAGGGAACCTAGCTTCCATTGTGAGAAACCCTTATGGAGC 489 Query 877 TGTCTCTAGTTTTGATTTATGGATACTAGAAGACGTTGAGAAACA--TGAATGGTCAAAA 934 ||||||||||| | ||||||||| |||||||||| ||||||| ||||||||||||| Sbjct 490 TGTCTCTAGTTGTAATTTATGGAG--TAGAAGACGTCAAGAAACACATGAATGGTCAAAA 547 Query 935 CAAAAATGTGTGTTTCCTATCTCTGTGTGGGAtttttttGAC-CTTGGTGGAATGTCTTT 993 ||||||||||||||||| | ||||||||||||| || ||| || ||| |||| ||||| Sbjct 548 CAAAAATGTGTGTTTCCCAAATCTGTGTGGGATTCTTATGAGTCT-GGTCGAATATCTTT 606 Query 994 TCCAGGTACAAATAGGGCTGGTGAGATCATCATGGCTCCAAGTTTGTTGTCA-GTCAATC 1052 ||||||||| || | ||||||||||||||| || |||||| ||||||||||| | |||| Sbjct 607 TCCAGGTACCAACAAGGCTGGTGAGATCATTATAGCTCCACGTTTGTTGTCACG-CAATG 665 Query 1053 TTCAACCCTTCTATATTTTCTACTACAATGTTGAAACAAAAAACATAAGAAGAGTTAGGC 1112 || ||| | ||| | ||||||||||||||||||||||||| |||||||||||||| Sbjct 666 TTGGACCA--C-ATAAT--CTACTACAATGTTGAAACAAAAAACTTAAGAAGAGTTAGGG 720 Query 1113 TCCTAGGAATTGGAGAC-AGTGAAGAGTTTAGGCGCTCTTATGGATTCGGG-GA-GC--- 1166 ||||||| ||||||||| | | || | ||||||||||||| ||| || || || Sbjct 721 TCCTAGGGATTGGAGACGA-TAAA-A----AGGCGCTCTTATGTATTTGGAAGAAGCTTG 774 Query 1167 AC-GCTAAA-G-CTTTTGTCAATATCG-C---ACATCAACACGTCGAGAGCATTGCC-TT 1218 | | | | |||||||| ||| || | ||||||||||| |||||| ||| || || Sbjct 775 ATTGTTTTGTGACTTTTGTCCATACCGGCCGCACATCAACACGCCGAGAGTATTACCGTT 834 Query 1219 CTTTAAGGATCCT 1231 |||||||||||| Sbjct 835 -TTTAAGGATCCT 846 > AT1G31620.1 | Symbols: | unknown protein; Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11316941-11317894 FORWARD LENGTH=336 Length=336 Score = 73.1 bits (39), Expect = 6e-12 Identities = 39/39 (100%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 1122 TTGGAGACAGTGAAGAGTTTAGGCGCTCTTATGGATTCG 1160 ||||||||||||||||||||||||||||||||||||||| Sbjct 262 TTGGAGACAGTGAAGAGTTTAGGCGCTCTTATGGATTCG 300 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61947472530 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5