BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922465
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32660.1 | Symbols: | F-box and associated interaction doma... 739 0.0
AT1G33743.1 | Symbols: | Pseudogene of AT1G32660; F-box family... 544 1e-153
AT1G31620.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 73.1 6e-12
> AT1G32660.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11811040-11812380 FORWARD LENGTH=1341
Length=1341
Score = 739 bits (400), Expect = 0.0
Identities = 980/1247 (79%), Gaps = 92/1247 (7%)
Strand=Plus/Plus
Query 35 AAGAATGAGAAAG-ACACAACAAACCCTAGTAAGTTAGACTTATTAGATTCGCTCCCTCT 93
||| ||||||||| | || |||||||||||||||||||| ||||||||||| |||||
Sbjct 140 AAG-ATGAGAAAGAAGAC-ACAAACCCTAGTAAGTTAGA---GTTAGATTCGCTGCCTCT 194
Query 94 TGATCTAAAGATGGCTATACTAACTAGATTGTCTGCCAAGTCTCTAAAGAATTTTCGATG 153
||| ||||||||||| ||||| |||||| | ||||||||||||| | ||| || |||||
Sbjct 195 TGACCTAAAGATGGCGATACTGACTAGAATCCCTGCCAAGTCTCTTATGAAGTTGCGATG 254
Query 154 CGTGTCAAAGATGTGGTCTTCCATCATCCGAAGCCGAGGATTCATTGATTCCTTCTTCTC 213
||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |
Sbjct 255 CGTGTCAAAGATGTGGTCTTCCATCATCCGAAGCCGAGGTTTCATTGATTCCTACTACGC 314
Query 214 TATGTCCGCAAAGCAATCACGGTTTATAGTCAGTTT-ATGTAACATTGTATTCGGTGAGC 272
||| ||| | ||||||||||||||||||||| |||| | ||||| || ||| ||||
Sbjct 315 TATCTCCTCGAAGCAATCACGGTTTATAGTCGGTTTGA-GTAACGCTGCATTTAACGAGC 373
Query 273 CTGAGGAGAAGCTTATCTTATTCTTCTCGTTTTCACACGACGAGGGAGATGA-Gtcttct 331
||||| || |||||| ||| ||||||||||||| ||||| || ||||| || |||||||
Sbjct 374 CTGAGAAGCAGCTTACCTTCCTCTTCTCGTTTTCCCACGAAGACGGAGA-GAAGTCTTCT 432
Query 332 tcttcttcttcttTGGTACCCAATTTCGAGATGGCTCTTCCTGCTGTGAGCTTTAGTTT- 390
|||||||||| | ||||||||| ||||||||||| |||| ||| ||||| || |
Sbjct 433 TCTTCTTCTT-T--GGTACCCAACTTCGAGATGGCAGTTCC--CTGC-AGCTT-AGCTGG 485
Query 391 C-TACTCAGGGTCTT-GCGCTTCTTTACATGGCATTCTCACTGTTGAAACTGAAGGTCAG 448
| | |||| |||| | |||||||| |||||||||||| |||||||| | | | ||
Sbjct 486 CCT-CTCACACTCTTTG-GCTTCTTTCCATGGCATTCTCGCTGTTGAA---G--G-TAAG 537
Query 449 TTGATGATGTGTAACCCTAGCACCGAGCAAGTCGTTAAGTTAACTAGT-GACTGTATTTT 507
| ||||||||||||||| ||| |||||| || || |||| | || | | || ||
Sbjct 538 --G-TGATGTGTAACCCTAACACGGAGCAATTCACTACGTTACCC-GTTGGCACCATCTT 593
Query 508 TGTTGGTTACGATCCGATTGATGATCAATACAAAGTATTATCCTGGGATAAC-ATAATTT 566
||| || |||||||||||||| ||||||||||||| | || ||| ||||
Sbjct 594 TGTGGGGTACGATCCGATTGACGATCAATACAAAGCGCTCGGCTTTGATTTTGATAA--- 650
Query 567 GGGAGG--ATCCTAATGCTCACCTAAAGCACAAGGTATTA-ACATTGGGAGATGGTCAAG 623
| || | || ||||||| | | |||||||| || |||||||||| |||| |||
Sbjct 651 GAGATGTCATGGTAATGCT-AT-TGGT-CACAAGGT-TTGGACATTGGGAGGTGGTGAAG 706
Query 624 GA-TGGAGACACATTAAAAAT-ACCACTTT-ACCTTATATGGC-GATA-T-C-ACCAAAT 676
|| || ||||| |||| | | ||| || |||||||| | | |||| | | |||||||
Sbjct 707 GAATG-AGACAGATTAGAGGTGACC--TTGCACCTTATA-GACCGATACTACTACCAAAT 762
Query 677 GTATGCATCAACGGTTTTCTCTACTATGGTGCGT-ATTGCTTAACACAAACTAGAGATCC 735
||||||||||||||| || ||||||||||||| | || |||| | ||||| | ||||||
Sbjct 763 GTATGCATCAACGGTGTTATCTACTATGGTGC-TCATACCTTATCCCAAACCAAAGATCC 821
Query 736 AGTTATGGTGTGTTTTGATGTTAGATCTGAGAAACTAAGTTTTATCAAAGCGCCTCCGGT 795
|||||| |||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 822 AGTTATTGTGTGTTTTGATGTTAGATCTGAGAAACTAAGTTTTATCACTGCACCTGCGGT 881
Query 796 TGTCCTCCAATGGGGGAAGGAAG-C-AGTGTTCATAGAATACAAAGGGAAGCTAGCTTCC 853
||||||||||| ||||| | ||| | | | ||||||| ||||||||||||||||||||
Sbjct 882 TGTCCTCCAATCGGGGATG-AAGTCTA-TACTCATAGACTACAAAGGGAAGCTAGCTTCT 939
Query 854 ATTGTGGGAAACACTTATGGAGCT-GTCTCT--AGTTTTGATTTATGGATACTAGAAGAC 910
|||||| ||||| | | ||| | | || || ||||||| ||| |||||||||||||||
Sbjct 940 ATTGTGAGAAACTCCTGTGGTGGTTGTATCAGCAGTTTTGTTTTTTGGATACTAGAAGAC 999
Query 911 GTTGAGAAACATGAATGGTCAAAACAAAAATGTG-TGTTTCC-TATCTCTGTGTGGGAtt 968
|||||||||||||||| | |||| |||| | ||||| || |||| |||||||||
Sbjct 1000 CCCAAGAAACATGAATGGTCTAGGCAAAGTTGTGAT-TTTCCCTA-CTCTCTGTGGGATT 1057
Query 969 tttttGACCTTGGTG-GAATGTCTTT-TCCAGGTACAAATAGGGCTGGTGAGATCATCAT 1026
| ||| || | |||| | ||| | || || || | ||||||||||||||| ||
Sbjct 1058 ATGTTGGGAATG-TCAGAATATGTTTCTTT-GGCACCAACAAGGCTGGTGAGATCATTAT 1115
Query 1027 GGCTCCAA-GTTTGTTGTCA-GTCAATCTTCAACCCTTCTATATTTTCTACTACAATGTT 1084
|| |||| |||| |||||| | | || ||| ||||||| ||||||||||| ||||||
Sbjct 1116 TGCCCCAATGTTT-TTGTCACG-CGATGTTCGGTCCTTCTACATTTTCTACTATAATGTT 1173
Query 1085 GAAACAAAAAACATAAGAAGAGTTAGGCTCCTAGGAATTGGA-GAC-AGTGA-AGAGTTT 1141
|||||||||| ||| |||||||||||||||| |||||||||| | | | | | |||||||
Sbjct 1174 GAAACAAAAACCATGAGAAGAGTTAGGCTCCGAGGAATTGGAAG-CGA-T-ATAGAGTTT 1230
Query 1142 AGGCGCTCTTATGGATTCGGGGAGCACGCTA---AA--GCTTTTGTCAATATCGCACATC 1196
|||||||||||||||| || | || | | || || | ||| |||||||||||
Sbjct 1231 AGGCGCTCTTATGGATCCGAAAA-CAAGTTGTGTAATTGCCAT-GTCCGTATCGCACATC 1288
Query 1197 AACACGTCGAGAGCATTGCCTTCTTTAA-GGATCCTTTTA-TTTAAG 1241
||||||| ||||| |||||||| ||||| ||||| | | | ||||||
Sbjct 1289 AACACGTTGAGAGTATTGCCTT-TTTAAAGGATCATATAAATTTAAG 1334
> AT1G33743.1 | Symbols: | Pseudogene of AT1G32660; F-box family
protein | chr1:12231684-12232532 FORWARD LENGTH=849
Length=849
Score = 544 bits (294), Expect = 1e-153
Identities = 723/913 (79%), Gaps = 97/913 (11%)
Strand=Plus/Plus
Query 348 TACCCAATTTCGAGATGGCTCTTCCTGCTGTGAGCTTTAGTTTCTACTCAGGGTCTTGCG 407
|||||||||| ||||| ||| |||| ||||||||||||||||| | |||||||||||||
Sbjct 2 TACCCAATTTTGAGAT-GCT-GTCCTTCTGTGAGCTTTAGTTTCCATTCAGGGTCTTGCG 59
Query 408 CTTCTTTACATGGCATTCTCACTGTTGAAACTGAAGGTCAGTTGATGATGTGTAACCCTA 467
||| ||| |||||||||||| | ||||| ||||||||| ||||||||||| ||||||||
Sbjct 60 CTTATTTCCATGGCATTCTCGTTATTGAAGCTGAAGGTCGGTTGATGATGTATAACCCTA 119
Query 468 GCACCGAGCAAGTCGTTAAGTTAACTAGTGACTG-TATTTTTGTTGGTTACGATCCGATT 526
| ||||||||| || |||||||| |||| || | || ||||||||||||||||||||||
Sbjct 120 GAACCGAGCAATTCATTAAGTTACCTAG-AACCGCTACTTTTGTTGGTTACGATCCGATT 178
Query 527 GATGATCAATACAAAGTATTATCCTGGGATAACATAATTTGGGAGGATCCTAATGCTCAC 586
|||||||| ||||||| | |||| | |||| |||| || || |||
Sbjct 179 GATGATCAGTACAAAG---------G--ATAA--TG----GGGATGATCGTAGTGGTCAT 221
Query 587 CTAAAGCACAAGGTATTAACATTGGGAGATGGTCAAGGATGGAGACACATTAAAAATACC 646
|||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||
Sbjct 222 CTAAAGCACAAGGTGTTAACATTAGGAGGTGTTCAAGGATGGAGACACATTAAAAATACC 281
Query 647 -ACTTTACCTTATATGGCG-ATATCACCAAATGTATGCATCAACGGTTTTCTCTACTATG 704
| ||||||||| | | | |||| ||| |||||||||||||||||||||||||||||||
Sbjct 282 TA-TTTACCTTAGA-GAAGGATATAACCGAATGTATGCATCAACGGTTTTCTCTACTATG 339
Query 705 GTGCGTATTGCTTAACACAAACTAGAGATCCAGTTATGGTGTGTTTTGATGTTAGATCTG 764
|| ||| |||| |||| | | | || |||| | || | || |
Sbjct 340 GT----ATT--TTAATACAACC-A-A-AT---GTTA-G----------ATCT--GA---G 371
Query 765 AGAAACTAAGTTTTATCAAAGCGCCTCCGGTTGTCCTCCAATGGGGGAAGGAAGCAGTGT 824
| || |||||||||||||| || ||| | |||||||| |||||||||||||| | | | |
Sbjct 372 A-AA-CTAAGTTTTATCAATGCACCTGCTGTTGTCCTGCAATGGGGGAAGGACGAAATAT 429
Query 825 TCATAGAA-TACA-AA--G---GG-AAGCTAGCTTCCATTGTGGGAAACACTTATGGAGC 876
|||||||| || | || | || || ||||||||||||||| ||||| ||||||||||
Sbjct 430 TCATAGAAATATAGAATAGAAAGGGAACCTAGCTTCCATTGTGAGAAACCCTTATGGAGC 489
Query 877 TGTCTCTAGTTTTGATTTATGGATACTAGAAGACGTTGAGAAACA--TGAATGGTCAAAA 934
||||||||||| | ||||||||| |||||||||| ||||||| |||||||||||||
Sbjct 490 TGTCTCTAGTTGTAATTTATGGAG--TAGAAGACGTCAAGAAACACATGAATGGTCAAAA 547
Query 935 CAAAAATGTGTGTTTCCTATCTCTGTGTGGGAtttttttGAC-CTTGGTGGAATGTCTTT 993
||||||||||||||||| | ||||||||||||| || ||| || ||| |||| |||||
Sbjct 548 CAAAAATGTGTGTTTCCCAAATCTGTGTGGGATTCTTATGAGTCT-GGTCGAATATCTTT 606
Query 994 TCCAGGTACAAATAGGGCTGGTGAGATCATCATGGCTCCAAGTTTGTTGTCA-GTCAATC 1052
||||||||| || | ||||||||||||||| || |||||| ||||||||||| | ||||
Sbjct 607 TCCAGGTACCAACAAGGCTGGTGAGATCATTATAGCTCCACGTTTGTTGTCACG-CAATG 665
Query 1053 TTCAACCCTTCTATATTTTCTACTACAATGTTGAAACAAAAAACATAAGAAGAGTTAGGC 1112
|| ||| | ||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 666 TTGGACCA--C-ATAAT--CTACTACAATGTTGAAACAAAAAACTTAAGAAGAGTTAGGG 720
Query 1113 TCCTAGGAATTGGAGAC-AGTGAAGAGTTTAGGCGCTCTTATGGATTCGGG-GA-GC--- 1166
||||||| ||||||||| | | || | ||||||||||||| ||| || || ||
Sbjct 721 TCCTAGGGATTGGAGACGA-TAAA-A----AGGCGCTCTTATGTATTTGGAAGAAGCTTG 774
Query 1167 AC-GCTAAA-G-CTTTTGTCAATATCG-C---ACATCAACACGTCGAGAGCATTGCC-TT 1218
| | | | |||||||| ||| || | ||||||||||| |||||| ||| || ||
Sbjct 775 ATTGTTTTGTGACTTTTGTCCATACCGGCCGCACATCAACACGCCGAGAGTATTACCGTT 834
Query 1219 CTTTAAGGATCCT 1231
||||||||||||
Sbjct 835 -TTTAAGGATCCT 846
> AT1G31620.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:11316941-11317894 FORWARD LENGTH=336
Length=336
Score = 73.1 bits (39), Expect = 6e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1122 TTGGAGACAGTGAAGAGTTTAGGCGCTCTTATGGATTCG 1160
|||||||||||||||||||||||||||||||||||||||
Sbjct 262 TTGGAGACAGTGAAGAGTTTAGGCGCTCTTATGGATTCG 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5