BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922469
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33750.1 | Symbols: | Terpenoid cyclases/Protein prenyltran... 1358 0.0
> AT1G33750.1 | Symbols: | Terpenoid cyclases/Protein prenyltransferases
superfamily protein | chr1:12233769-12236476 FORWARD
LENGTH=1940
Length=1940
Score = 1358 bits (735), Expect = 0.0
Identities = 1020/1152 (89%), Gaps = 41/1152 (4%)
Strand=Plus/Plus
Query 21 ATGGAAGCAGCAACAATGGGTTTT-GTTGCTAAAACTCTCCCTCACCTTGGCAATGGCAC 79
||||||||||||| |||||||||| | |||||||||||||||||||||||||| || ||
Sbjct 1 ATGGAAGCAGCAAGAATGGGTTTTCG-AGCTAAAACTCTCCCTCACCTTGGCAACGGTAC 59
Query 80 TCGTCTTCCTCTTAAGACCAAACTCTCGCTCTTTCCTATGCATTTGCTTCACAACCACAT 139
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 TCGACTTCCTCTTAAGACCAAACTCTCGCTCTTTCCTATGCATTTGCTTCAAAACCACAC 119
Query 140 TACTCTTTCTCGGAGATCGACAAAACAAAACTTATGTGTTAAGGCAACTAGTGAGAGTAG 199
||||||||| |||||||| ||||||| ||||||||||| ||||| |||| ||| |||
Sbjct 120 TACTCTTTCCCGGAGATCAACAAAACTCAACTTATGTGTCAAGGCTTGTAGTAAGACTAG 179
Query 200 TGGTGATGTTGAGAGTAGCCGTCCTTTGCCTCA-TGTTGCTCCC-ACTCTTTGGGGAGAT 257
| | | |||||||||||| ||||| |||||||| | ||||||| | |||||||||||||
Sbjct 180 T-G-G-TGTTGAGAGTAGTCGTCCCTTGCCTCACAG-TGCTCCCGA-TCTTTGGGGAGAT 234
Query 258 CACATCCTCTCTGTCCCCACCGAAAACTCGGAATTTGATTCACTAGAGACAGAGATTGAA 317
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 235 CACATCCTCTCTGTCCCCACCGAAAACTCGGAATTTGATACACTAGAGACAGAGATTGAA 294
Query 318 TCAATTATAAAGCCGAAAGTGAAGAA-CATGCTAATGTCCTCTCACAACACTGATAAAGA 376
||||| | || ||||||||||| ||| |||||||||||| |||||||| ||||| |||||
Sbjct 295 TCAAT-A-AA-GCCGAAAGTGA-GAAACATGCTAATGTCGTCTCACAAGACTGACAAAGA 350
Query 377 GAGAATAT-TACTCATCCACTTGCTTATGTGTCTTGGTACTTCCCATTACTTTGAGAAGG 435
|||||||| | ||||| ||||||||||| || |||||||||| |||||||||||||||||
Sbjct 351 GAGAATATGT-CTCATACACTTGCTTATTTGCCTTGGTACTTTCCATTACTTTGAGAAGG 409
Query 436 AAATCGAAGAGATTCTAGACCAGGCTTTT-GAGAAGTTGGAC-TCGTTAATTAGAGACGA 493
|||| |||||||||||||| ||||||||| | |||||||||| | | || ||| ||||||
Sbjct 410 AAATTGAAGAGATTCTAGAACAGGCTTTTCG-GAAGTTGGACAT-GCTATTTACAGACGA 467
Query 494 AGATGATTTGGAAACAATTGCCATCATGTTTGAGGTTTTCAGATTATATGGACATCA-GA 552
|||||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 468 AGATGATTTGGAGACAACTGCCATCATGTTTGAGGTTTTCAGATTATATGGACA-CAAGA 526
Query 553 TTTCTTGTGATGTGTTCGATAGATTCAAAGGTGTTGATGGGAAGTTCAA--A-CACCTAG 609
||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||
Sbjct 527 TTTCTTGTGATGTGTTCGATAGATTCAAAGGTGTTGATGCCAAGTTCAAGGAACATCTAG 586
Query 610 TCAGTGATGTTAGGGGAATACTACAGCTGTATGAAGGAGCGCATCTCACGACACCCTCCG 669
||||||||||| ||||||| ||||||||||| |||| |||||||||| | ||||||| ||
Sbjct 587 TCAGTGATGTTCGGGGAATGCTACAGCTGTACGAAGCAGCGCATCTCGCAACACCCTTCG 646
Query 670 AAGA-TGTAATGGACGAAGCCCTGAGTTTTACAAGGTATCACTTGGAATCTCTGGCCGGA 728
|| | | || ||||||||||| ||||||| ||||||||||||||||||||| |||||||
Sbjct 647 AA-ACTATATTGGACGAAGCCTTGAGTTTCACAAGGTATCACTTGGAATCTTTGGCCGGC 705
Query 729 CAAGAAGCGACGGCTCCTCATATGGCACA-ACATATACTAAACGCATTGTATAAACCTCG 787
||| |||| || ||||||||||| || | ||||||||| ||||||||||||||||||||
Sbjct 706 CAACAAGCTACAGCTCCTCATATCTCA-AGACATATACTTAACGCATTGTATAAACCTCG 764
Query 788 GTTT-TTCAAGTTACAAATAGA-AGCTGCCAGGGAATATCTTTC-TTTCTATGAAAAAGA 844
|||| || ||| | ||||| | ||||||| |||||||| || | ||||||| |||||||
Sbjct 765 GTTTCTT-AAGATGGAAATA-ATAGCTGCCCGGGAATATATT-CATTTCTATCAAAAAGA 821
Query 845 GAG-TCATGATGAGACGTTGCTCAAGTTTGCGAAGCTCAACTTCAACTTTTGCCAGCTCC 903
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 822 -AGGTCATGATGAGACATTGCTCAAGTTTGCGAAGCTCAACTTCAACTTTTGCCAGCTAC 880
Query 904 ATTACGTTAGAGAGCTAAAAACTCTCACTAAATGGTGGAAGGACATTGGTCTTGTATATA 963
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||
Sbjct 881 ATTACGTTAGAGAGCTAAAAACTCTCACCAAATGGTGGAAAGACATTGATCTTCCATATA 940
Query 964 AGCTACCTTTCATTAGAGACAGGCTTTTGGAGACCTTTGCCGGTGTCATAGCGTTGTTTT 1023
||||||||| ||| |||||||||||| | ||||||||| ||||||||| ||| ||| |
Sbjct 941 AGCTACCTTACATCAGAGACAGGCTTCTAGAGACCTTTATCGGTGTCATGGCGGTGTATC 1000
Query 1024 TCGAGCCACACTATTCA-TTGGGGAGAATTATAACCACTAAAGCTTCCCAAGTTACAATA 1082
||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||| | | ||
Sbjct 1001 TCGAGCCACACTATTCACTTGGG-AGAATTATAGCCACTAAAGTTTCCCAAGTGATAGTA 1059
Query 1083 GTTATGGATGATGCATGTGATGCATATGGAACTTGCTCTGAAGTTAGAAGT-TTCATCGA 1141
||||||||||| | ||||||||||||||||||| |||||||||||||||| || || ||
Sbjct 1060 GTTATGGATGACACCTGTGATGCATATGGAACTTTCTCTGAAGTTAGAAGTCTT-ATTGA 1118
Query 1142 TTCTTTGCAAAG 1153
||||||| ||||
Sbjct 1119 TTCTTTGGAAAG 1130
Score = 272 bits (147), Expect = 8e-72
Identities = 257/309 (83%), Gaps = 12/309 (4%)
Strand=Plus/Plus
Query 1153 GTTTCAGAATCATCATCCGAAGTATGA-TGGAAACTATGGAAGATATTGAAAGAGAAATG 1211
|||| |||||| |||||| |||||| | | ||||| ||||||||||||||||||||||||
Sbjct 1166 GTTTAAGAATCGTCATCCAAAGTAT-AGTTGAAACAATGGAAGATATTGAAAGAGAAATG 1224
Query 1212 AAGCCGCGCGGAAGATCCTCTAGTGTGCAATACTT-GATAGAAGAGCTTAAGATCTATGC 1270
|||||||| ||||||||||| ||||||||| || | |||||||| |||||||| |||
Sbjct 1225 AAGCCGCGAGGAAGATCCTCGAGTGTGCAAGACACCG-TAGAAGAGATTAAGATC-ATGG 1282
Query 1271 GGA-ATCGTACG-TAGAGTTATCAAAATGGTCCCGATCAGGTCATGTTCCAACCTTTGAT 1328
||| | |||||| | || ||||||||||| | ||| ||||||| |||||||||||||||
Sbjct 1283 GGAGAGCGTACGCT-GAAATATCAAAATGGGCACGAGCAGGTCACGTTCCAACCTTTGAT 1341
Query 1329 AAATACATTGAGGTTGGGATTGTCTCGTCAGGGATGAGATTCTTGGGAATGTTA-AGCTT 1387
| || |||||| ||||| ||| |||||||||||| |||| ||| | ||||| | |||||
Sbjct 1342 GACTATATTGAGCTTGGGCTTGACTCGTCAGGGATTAGATGCTTTGCAATGT-ACAGCTT 1400
Query 1388 TATAACGCTGGAAGATTGCGATGAAAACCAAACGA-CTGAGTGGTTCGAATCCAAACCTA 1446
|||| || |||||||||| || || || ||||||| | | ||||||| |||||||||| |
Sbjct 1401 TATATCGATGGAAGATTGTGAGGAGAATCAAACGAAC-GCGTGGTTCAAATCCAAACCCA 1459
Query 1447 ATATCTTAC 1455
| || ||||
Sbjct 1460 AAATGTTAC 1468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87750552660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5