BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922470

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09560.2 | Symbols:  | Lipin family protein | chr3:2934617-2...   244    2e-64


> AT3G09560.2 | Symbols:  | Lipin family protein | chr3:2934617-2939456 
REVERSE LENGTH=3465
Length=3465

 Score =  244 bits (132),  Expect = 2e-64
 Identities = 153/163 (94%), Gaps = 2/163 (1%)
 Strand=Plus/Plus

Query  61    AGGAGAATGGATATCAGTTGCTGTTTCTGAGCGCTCGTGCCATCGTTCAGGCATATCTAA  120
             ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct  2639  AGGAGAATGGATATCAGTTACTGTTTTTGAGCGCTCGTGCCATCGTTCAGGCATATCTAA  2698

Query  121   CGAGAAGTTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTACCAAATGG-CCATGTG  179
             | |||| |||||||||||||||||||||||||||||||||||| ||||  || || ||||
Sbjct  2699  CAAGAAATTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTGCCAACCGGTCC-TGTG  2757

Query  180   GTCATTTCACCAGATGGCCTATTTCTAGCATTGTACCGTGAAG  222
             ||||||||||||||||||||||||| |||||||||||||||||
Sbjct  2758  GTCATTTCACCAGATGGCCTATTTCCAGCATTGTACCGTGAAG  2800



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11209708027


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5