BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922471

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77500.1 | Symbols:  | Protein of unknown function (DUF630 a...   215    2e-55


> AT1G77500.1 | Symbols:  | Protein of unknown function (DUF630 
and DUF632) | chr1:29121489-29125191 FORWARD LENGTH=3158
Length=3158

 Score =  215 bits (116),  Expect = 2e-55
 Identities = 135/144 (94%), Gaps = 2/144 (1%)
 Strand=Plus/Plus

Query  135   GGCGTCAATA-TTATCTTATCCAGGATCATGTATCTGGTAGCACCATCTACACGGTCATC  193
             ||||| || | ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1729  GGCGTTAA-AGTTATCTTATCCAGGATCATGTATCTGGTAGCACCATCCACACGGTCATC  1787

Query  194   GCACTCTCGGCCCAGACTATCAATACGTTTAACATCTAGGACACGGAAAATGGCGAAAGC  253
             |||||||| |||||||||||||||||||||||||||||| || || |||||||||||| |
Sbjct  1788  GCACTCTCAGCCCAGACTATCAATACGTTTAACATCTAGAACTCGAAAAATGGCGAAATC  1847

Query  254   ATACAATGGACAAGATGTTAATGG  277
             ||||||||||||||||||||||||
Sbjct  1848  ATACAATGGACAAGATGTTAATGG  1871



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14225772967


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5