BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922479 Length=656 Score E Sequences producing significant alignments: (Bits) Value AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3... 634 0.0 AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conj... 473 7e-133 > AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3:19898788-19900065 REVERSE LENGTH=1193 Length=1193 Score = 634 bits (343), Expect = 0.0 Identities = 450/500 (90%), Gaps = 14/500 (3%) Strand=Plus/Plus Query 109 TGCTCTCACTTCTACTGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGAC 168 ||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||| Sbjct 418 TGCTCTCACTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACAAGAC 477 Query 169 AACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCGAGAGCTCTGGTCGGCTCGAGCCA 228 ||||| ||||||||||| |||| ||||||||||| | |||||||||||||||||| Sbjct 478 AACATTCTCTCAATCGAATGTCCTGTCTCTGGTT------GTTCTGGTCGGCTCGAGCCA 531 Query 229 GATAAGTGTCGTCAAATCTTGCC-AAGAGAGGTTTTTGATCAGTGGGGTGATGCTCTT-T 286 ||| |||||||||| || ||||| || |||||||||||||| ||||||||||||| || | Sbjct 532 GATCAGTGTCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCGGTGGGGTGATGCT-TTGT 589 Query 287 CTGAAGCAGTATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTGCTT 346 |||||||||| |||||||||| |||| ||| || |||||||| |||||||||||||||| Sbjct 590 GTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCTT 649 Query 347 TGCTTTTCATT-GACGAGAGTGAAGTGAAGATGAAAGATTCGGAGTGTTCTCATTGCCAT 405 || ||||| || || ||||||||||| ||||||||||||||||||||| ||||||| ||| Sbjct 650 TGGTTTTC-TTAGAAGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTCAT 708 Query 406 AGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGTTT 465 |||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 709 AGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAGTTT 768 Query 466 CAGAAGCTAGCAGAAAACGAAAGAGGAAGAGATGATATTTTGCTCGCGACGATGGCAAAG 525 ||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 769 CAGAAGCTAGCGGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCAAAG 828 Query 526 AAAAAGAAATGGAAAAGATGTTATTCTTGCAAACTT-TATATTGAGAAGTCTCAGGGTTG 584 |||||||||||||||||||| |||||||||| || ||||||||||| ||||||||||| Sbjct 829 CAAAAGAAATGGAAAAGATGTCCTTCTTGCAAA-TTCTATATTGAGAAATCTCAGGGTTG 887 Query 585 CTTATACATGAAGTGCAGGT 604 |||||||||||||||||||| Sbjct 888 CTTATACATGAAGTGCAGGT 907 > AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conjugating enzyme 7 interacting protein 4 (UbcM4- interacting protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518: Zinc finger, C3HC4 type (RING finger), signature and Pfam:PF01485 IBR domain; blastp match of 25% identity and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating enzyme 7 interacting protein 4 (UbcM4- interacting protein 4) (RING finger protein 144). (Mouse) {Mus musculus} | chr2:11253700-11254930 REVERSE LENGTH=1231 Length=1231 Score = 473 bits (256), Expect = 7e-133 Identities = 431/512 (84%), Gaps = 25/512 (5%) Strand=Plus/Plus Query 108 CTGCTCTCACTTC-TACTGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAG 166 ||| |||||| | || ||||||||||||||||| |||||||||||||| || ||||||| Sbjct 516 CTGTTCTCAC-ACTTATTGCAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTACAAG 574 Query 167 ACAACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCGAGAGCTCTGGTCGGCTCGAGC 226 ||||||| ||||||||| | || | ||| ||||||| |||| || | |||||||| Sbjct 575 ACAACATTCTCTCAATCAAATGCCCTGTTTCTGGTT------GCTCGGGGCAGCTCGAGC 628 Query 227 CAGATAAGTGTC-GTCAAATCTTGCCAAGAGAGGTTTTTGATCAGTGGGGTGATGCTCTT 285 | ||||| || | |||||||| |||||||||| || ||||||| |||||| || |||||| Sbjct 629 CCGATAAATG-CGGTCAAATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGAGACGCTCTT 687 Query 286 T-CTGAAGCAGT-ATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTG 343 | | || || || ||| ||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 688 TGC-GAGGCGGTGATT-ATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCTG 745 Query 344 CTTTGCTTTTCATT-GACGAGAGT---GAAGTGAAGATGAAAGAT-TCGGAGTGTTCTCA 398 ||||||| ||| || ||||||||| |||| ||||||||| | | ||||||||| |||| Sbjct 746 CTTTGCTCTTC-TTGGACGAGAGTGAAGAAGAGAAGATGAATG-TATCGGAGTGTCCTCA 803 Query 399 TTGCCATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGA 458 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 804 TTGCCATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCGA 863 Query 459 GGAGTTTCAGAAGCTAGCAGAAAACGAAAGAGGAAGAGATGATATTTTGCTCGC-GACGA 517 ||||||||| |||||||| || |||||||||| ||||| ||||| ||| | | || | Sbjct 864 GGAGTTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGGATATATTGTT-GAAGAATA 922 Query 518 TGGCAAAGAAAAAGAAATGGAAAAGATGTTATTCTTGCAAACTT-TATATTGAGAAGTCT 576 ||||| ||| ||||| |||| ||||||| |||||||||| || || ||||| || ||| Sbjct 923 TGGCAGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTGCAAA-TTCTACATTGAAAAATCT 981 Query 577 CAGGGTTGCTTATACATGAAGTGCAGGTCTCT 608 ||||||||||||||||||||||||||| ||| Sbjct 982 GAGGGTTGCTTATACATGAAGTGCAGGTATCT 1013 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31697746757 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5