BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922479
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3... 634 0.0
AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conj... 473 7e-133
> AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3:19898788-19900065
REVERSE LENGTH=1193
Length=1193
Score = 634 bits (343), Expect = 0.0
Identities = 450/500 (90%), Gaps = 14/500 (3%)
Strand=Plus/Plus
Query 109 TGCTCTCACTTCTACTGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGAC 168
||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||
Sbjct 418 TGCTCTCACTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACAAGAC 477
Query 169 AACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCGAGAGCTCTGGTCGGCTCGAGCCA 228
||||| ||||||||||| |||| ||||||||||| | ||||||||||||||||||
Sbjct 478 AACATTCTCTCAATCGAATGTCCTGTCTCTGGTT------GTTCTGGTCGGCTCGAGCCA 531
Query 229 GATAAGTGTCGTCAAATCTTGCC-AAGAGAGGTTTTTGATCAGTGGGGTGATGCTCTT-T 286
||| |||||||||| || ||||| || |||||||||||||| ||||||||||||| || |
Sbjct 532 GATCAGTGTCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCGGTGGGGTGATGCT-TTGT 589
Query 287 CTGAAGCAGTATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTGCTT 346
|||||||||| |||||||||| |||| ||| || |||||||| ||||||||||||||||
Sbjct 590 GTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCTT 649
Query 347 TGCTTTTCATT-GACGAGAGTGAAGTGAAGATGAAAGATTCGGAGTGTTCTCATTGCCAT 405
|| ||||| || || ||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 650 TGGTTTTC-TTAGAAGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTCAT 708
Query 406 AGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGTTT 465
|||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 709 AGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAGTTT 768
Query 466 CAGAAGCTAGCAGAAAACGAAAGAGGAAGAGATGATATTTTGCTCGCGACGATGGCAAAG 525
||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 769 CAGAAGCTAGCGGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCAAAG 828
Query 526 AAAAAGAAATGGAAAAGATGTTATTCTTGCAAACTT-TATATTGAGAAGTCTCAGGGTTG 584
|||||||||||||||||||| |||||||||| || ||||||||||| |||||||||||
Sbjct 829 CAAAAGAAATGGAAAAGATGTCCTTCTTGCAAA-TTCTATATTGAGAAATCTCAGGGTTG 887
Query 585 CTTATACATGAAGTGCAGGT 604
||||||||||||||||||||
Sbjct 888 CTTATACATGAAGTGCAGGT 907
> AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518:
Zinc finger, C3HC4 type (RING finger), signature
and Pfam:PF01485 IBR domain; blastp match of 25% identity
and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse) {Mus musculus}
| chr2:11253700-11254930 REVERSE LENGTH=1231
Length=1231
Score = 473 bits (256), Expect = 7e-133
Identities = 431/512 (84%), Gaps = 25/512 (5%)
Strand=Plus/Plus
Query 108 CTGCTCTCACTTC-TACTGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAG 166
||| |||||| | || ||||||||||||||||| |||||||||||||| || |||||||
Sbjct 516 CTGTTCTCAC-ACTTATTGCAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTACAAG 574
Query 167 ACAACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCGAGAGCTCTGGTCGGCTCGAGC 226
||||||| ||||||||| | || | ||| ||||||| |||| || | ||||||||
Sbjct 575 ACAACATTCTCTCAATCAAATGCCCTGTTTCTGGTT------GCTCGGGGCAGCTCGAGC 628
Query 227 CAGATAAGTGTC-GTCAAATCTTGCCAAGAGAGGTTTTTGATCAGTGGGGTGATGCTCTT 285
| ||||| || | |||||||| |||||||||| || ||||||| |||||| || ||||||
Sbjct 629 CCGATAAATG-CGGTCAAATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGAGACGCTCTT 687
Query 286 T-CTGAAGCAGT-ATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTG 343
| | || || || ||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 688 TGC-GAGGCGGTGATT-ATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCTG 745
Query 344 CTTTGCTTTTCATT-GACGAGAGT---GAAGTGAAGATGAAAGAT-TCGGAGTGTTCTCA 398
||||||| ||| || ||||||||| |||| ||||||||| | | ||||||||| ||||
Sbjct 746 CTTTGCTCTTC-TTGGACGAGAGTGAAGAAGAGAAGATGAATG-TATCGGAGTGTCCTCA 803
Query 399 TTGCCATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGA 458
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 804 TTGCCATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCGA 863
Query 459 GGAGTTTCAGAAGCTAGCAGAAAACGAAAGAGGAAGAGATGATATTTTGCTCGC-GACGA 517
||||||||| |||||||| || |||||||||| ||||| ||||| ||| | | || |
Sbjct 864 GGAGTTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGGATATATTGTT-GAAGAATA 922
Query 518 TGGCAAAGAAAAAGAAATGGAAAAGATGTTATTCTTGCAAACTT-TATATTGAGAAGTCT 576
||||| ||| ||||| |||| ||||||| |||||||||| || || ||||| || |||
Sbjct 923 TGGCAGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTGCAAA-TTCTACATTGAAAAATCT 981
Query 577 CAGGGTTGCTTATACATGAAGTGCAGGTCTCT 608
||||||||||||||||||||||||||| |||
Sbjct 982 GAGGGTTGCTTATACATGAAGTGCAGGTATCT 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31697746757
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5