BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922482
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22700.1 | Symbols: LBD32 | LOB domain-containing protein 32... 429 1e-119
> AT4G22700.1 | Symbols: LBD32 | LOB domain-containing protein
32 | chr4:11933297-11933886 FORWARD LENGTH=590
Length=590
Score = 429 bits (232), Expect = 1e-119
Identities = 485/603 (80%), Gaps = 33/603 (5%)
Strand=Plus/Plus
Query 17 AAGAATGGCTTCCAACCGTTGTGCTGTTTGCAAGATCTTGAATGAAACTTGTGCT-CAAG 75
||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||
Sbjct 1 AAGAATGGCTTCCAACCGTTGTGCTGTCTGCAAAATTTTGAATGAAACTTGTGCTCCAA- 59
Query 76 GGTGCATCTCGGCACCACATTTTCCATCGAACGATACAAGTTTTGAAGATGTCAGTCGAG 135
|||||| | ||||||||||||||||| |||||| ||||||| ||| | | | || ||
Sbjct 60 TGTGCATTTATGCACCACATTTTCCATCAAACGATGCAAGTTTCAAAGTTATTATTC-AG 118
Query 136 -TCTTTGGAGCCATGAACGTCCGCAAGATCCTCGTTGATCTT-AACACCCCTGAACAACG 193
| ||||||||| |||| || |||| ||||| | | ||||| || || ||||||||
Sbjct 119 ATTTTTGGAGCCGTGAATGTTTGCAATATCCTTGATAATCTTGAA-TTTCCAGAACAACG 177
Query 194 TCAGATTGCTGCCAACTGCTTGCGCTATGAAGCTGAGGCTCGTCGACGTGACCCCATTTC 253
|||||||||||||||| || || |||| |||||||||||| |||| | || |||||
Sbjct 178 AGAGATTGCTGCCAACTGTTTACGTTATGCTGCTGAGGCTCGTATACGTAATCCTATTTC 237
Query 254 CGGTTGCCATGGCATGATCCTACACCACAAGAGTATTCTCAATAATATTGAACAAGAGAT 313
||||| |||| |||||| ||||| |||||| ||||||||||||| |||||||||| ||
Sbjct 238 TGGTTGTCATGACATGATTCTACAATACAAGAATATTCTCAATAATGTTGAACAAGATAT 297
Query 314 TGAGTCTACAAAGAATGAGCTT-GAACCCTACGTGGGATC-CGATCGAA-TGCCAAAATT 370
||| || | |||||||||| ||| |||| |||||| | ||||| || | ||||||||
Sbjct 298 TGAATCCGCGGTGAATGAGCTTGGAA-CCTATGTGGGA-CACGATC-AAGTACCAAAATT 354
Query 371 TTTTGATCTTCCTATGCCAGAAGATTTCCTCACT-ACATCAGCCTCTTTAGAtttttttG 429
|| ||||||||| |||||||| |||||||||| | ||| ||| ||||||||||| ||||
Sbjct 355 TTATGATCTTCCAATGCCAGATGATTTCCTCA-TGACACCAGTCTCTTTAGATTCTTTTA 413
Query 430 TTGAAAAAATAAAGAGTCTAAATGCAGTTCAAAAGAATCAACTTATGCAACTCCCAACAG 489
||| |||||| |||||| |||| | ||||||||||||||||||||||||||||||||| |
Sbjct 414 TTGCAAAAATTAAGAGTTTAAACGAAGTTCAAAAGAATCAACTTATGCAACTCCCAACTG 473
Query 490 CTG---AT---GCACAAATGATAATGGGTAAAATATTTTGGAATGG-GGAAGATCATAAG 542
||| || |||| |||||||||| || |||||| |||| | ||||||| | ||
Sbjct 474 CTGCTGATAATGCACCAATGATAATGAATAGCATATTTGGGAA-GATGGAAGAT-A-AA- 529
Query 543 AAGGATGAG-GATGGTCATGGTCCCGAAGCTGATGGCGCATCAACATCTGCTTGTCAGTG 601
|| ||| ||||| ||| | | |||||||| ||||||||||||||| || ||||
Sbjct 530 AACC-TGAAAGATGGGCATAG-----A-GCTGATGGTGCATCAACATCTGCTGGTAAGTG 582
Query 602 ATA 604
|||
Sbjct 583 ATA 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5