BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922484
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22700.1 | Symbols: LBD32 | LOB domain-containing protein 32... 444 5e-124
> AT4G22700.1 | Symbols: LBD32 | LOB domain-containing protein
32 | chr4:11933297-11933886 FORWARD LENGTH=590
Length=590
Score = 444 bits (240), Expect = 5e-124
Identities = 483/598 (81%), Gaps = 26/598 (4%)
Strand=Plus/Plus
Query 19 AAGAATGACTTCTAGCCATTGTGCTGTTTGCAAGATCTTGAAAGAAACTTGTGCT-CAAG 77
||||||| |||| | || ||||||||| ||||| || ||||| |||||||||||| |||
Sbjct 1 AAGAATGGCTTCCAACCGTTGTGCTGTCTGCAAAATTTTGAATGAAACTTGTGCTCCAAT 60
Query 78 GATGCATCTCCGCACCATATTTTCCATCGAATGATACGAGTTTCGAAGATGTCAGTAAAG 137
| ||||| | |||||| |||||||||| || ||| | |||||| ||| | | | | ||
Sbjct 61 G-TGCATTTATGCACCACATTTTCCATCAAACGATGCAAGTTTCAAAGTTATTA-TTCAG 118
Query 138 -TCTTTGGAGCCGTGAACATTCGCAAGATCCTTGCTGATCTT-AATACCCCTGAACAACG 195
| |||||||||||||| || |||| ||||||| | ||||| ||| || ||||||||
Sbjct 119 ATTTTTGGAGCCGTGAATGTTTGCAATATCCTTGATAATCTTGAAT-TTCCAGAACAACG 177
Query 196 TCAGATTGCTGCCAACTGCTTGCGCTATGCGGCTGAGGCTCGTAGACGTGATCCCATTTC 255
|||||||||||||||| || || ||||| ||||||||||||| |||| |||| |||||
Sbjct 178 AGAGATTGCTGCCAACTGTTTACGTTATGCTGCTGAGGCTCGTATACGTAATCCTATTTC 237
Query 256 TAGTTGTCATGGCATAATCCTACACCACAAGAGTATTCTCAATAATATTGAACAAGATAT 315
| ||||||||| ||| || ||||| |||||| ||||||||||||| |||||||||||||
Sbjct 238 TGGTTGTCATGACATGATTCTACAATACAAGAATATTCTCAATAATGTTGAACAAGATAT 297
Query 316 TGAGTCTACAAAGAATGAGCTT-GAATCCTACGTGGGAC-CTGATCGAGTGCCAAAATTT 373
||| || | |||||||||| ||| |||| ||||||| | |||| ||| |||||||||
Sbjct 298 TGAATCCGCGGTGAATGAGCTTGGAA-CCTATGTGGGACAC-GATCAAGTACCAAAATTT 355
Query 374 TTTGATCTTCCTATGCCAGAAGATTTCCTCACT-ACATCAGCCTCTTTAGATTTC-TTCG 431
| ||||||||| |||||||| |||||||||| | ||| ||| ||||||||| ||| ||
Sbjct 356 TATGATCTTCCAATGCCAGATGATTTCCTCA-TGACACCAGTCTCTTTAGA-TTCTTTTA 413
Query 432 TTGAAAAAATAAAGAGTTTAAATGCAGTTCAAAAGAATCAACTTATGCAACTCCCA---G 488
||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 414 TTGCAAAAATTAAGAGTTTAAACGAAGTTCAAAAGAATCAACTTATGCAACTCCCAACTG 473
Query 489 CTGCTGATGC-GCA--AATGATAATGGATAAAATATTTTGGAAGGGGGAAGATCAAAAGA 545
|||||||| ||| |||||||||| ||| |||||| ||||| ||||||| ||||
Sbjct 474 CTGCTGATAATGCACCAATGATAATGAATAGCATATTTGGGAAGATGGAAGATAAAAACC 533
Query 546 AGGATGATGGTCATGGTCCCGGAGCTGATGGCGCATCAACATCGGCTGGTCAGTGATA 603
| | ||||| ||| | ||||||||| ||||||||||| |||||| |||||||
Sbjct 534 TGAAAGATGGGCATAG------AGCTGATGGTGCATCAACATCTGCTGGTAAGTGATA 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5