BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922485

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G33810.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   137    3e-32


> AT1G33810.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast thylakoid membrane, chloroplast, 
chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED 
DURING: 13 growth stages; Has 39 Blast hits to 39 proteins 
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 
(source: NCBI BLink). | chr1:12265033-12266847 FORWARD LENGTH=660
Length=660

 Score =  137 bits (74),  Expect = 3e-32
 Identities = 78/80 (98%), Gaps = 0/80 (0%)
 Strand=Plus/Plus

Query  152  TGTGAATGGACCCAGCATTGTTAGATTGATTAAAATATGTCCTCAAAGAGATGTTTTGTA  211
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  490  TGTGAATGGACCCAGCACTGTTAGATTGATTAAAATATGTCCTCAAAGAGATGTTTTGTA  549

Query  212  TGAATTTTCGTAAGTACAAT  231
            ||||||||| ||||||||||
Sbjct  550  TGAATTTTCCTAAGTACAAT  569



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10405424043


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5