BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922520
Length=2257
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34130.1 | Symbols: STT3B | staurosporin and temperature sen... 3631 0.0
> AT1G34130.1 | Symbols: STT3B | staurosporin and temperature sensitive
3-like b | chr1:12429890-12433187 FORWARD LENGTH=2520
Length=2520
Score = 3631 bits (1966), Expect = 0.0
Identities = 2153/2243 (96%), Gaps = 13/2243 (1%)
Strand=Plus/Plus
Query 17 AGCAATGGGAGGAAAATCAGAGCCAACGAAATCGGAATCCATGGCGACGAAGAAGACGAA 76
||||||||||||||||||||||||| |||||||||||||||||||||| | | | |
Sbjct 107 AGCAATGGGAGGAAAATCAGAGCCAGCGAAATCGGAATCCATGGCGAC---G-A-A-G-- 158
Query 77 TCCAGATCTACTCAACAGTAGTTTCTTCTCTTTCAAATCCCTAAAATTGAAGACGAAGCA 136
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||
Sbjct 159 -CCAGATCTACTCAACACTAGTTTCTTCTCATTCAAATCCCTAAAATTGAAGACGAAACA 217
Query 137 ACAAGAACTCTTGCTCCGTATCTCGATCCTTGGTCTCGTCTACATCTTAGCCTTCATAGC 196
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 218 ACAAGAGCTCTTACTCCGTATCTCGATCCTTGGTCTCGTCTACATCTTAGCTTTCATAGC 277
Query 197 TCGTCTCTTCAGTGTTCTCCGATACGAATCAATGATCCACGAATTCGATCCGTATTTCAA 256
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 278 TCGTCTCTTCAGTGTTCTCCGCTACGAATCAATGATCCACGAATTCGATCCGTATTTCAA 337
Query 257 CTACCGTACGACTCTTTTCCTCACAGAGAAAGGCTTCTACGAGTTTTGGAACTGGTTTGA 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 338 CTACCGTACGACTCTTTTCCTCACAGAGAAAGGCTTCTACGAGTTTTGGAACTGGTTCGA 397
Query 317 TTCCGAGAGTTGGTATCCGCTAGGTCGAATCATCGGCGGTACGCTTTATCCTGGTCTTAT 376
|||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 398 TTCCGAGAGTTGGTATCCTCTAGGTCGAATCATCGGCGGTACTCTTTATCCCGGTCTTAT 457
Query 377 GGTCACAGCTGCGTTAATCTACTGGACATTGCGGTTTCTCCGATTCTTTGTTCATATCCG 436
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 458 GGTCACAGCTGCGTTAATCTACTGGACATTGCGATTTCTCCGATTCTTCGTTCATATCCG 517
Query 437 TGAGGTTTGTGTGTTAACCGCACCGTTTTTCGCGTCGAATACGACTTTAGTTGCGTATTT 496
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 518 TGAGGTTTGTGTGTTAACCGCACCGTTTTTCGCGTCGAATACGACTCTCGTTGCGTATTT 577
Query 497 CTTTGGTAAAGAGATTTGGGATACAGGAGCTGGTCTTGTTGCTGCTGTT-TTAATCGCTA 555
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 578 CTTTGGTAAAGAGCTTTGGGATACAGGAGCTGGTCTTGTTGCTGCTGTTCTT-ATCGCTA 636
Query 556 TTTGCCCCGGATACATTTCTCGGTCTGTAGCCGGGTCGTATGATAACGAAGCTGTTGCGA 615
|||| || |||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 637 TTTGTCCTGGATACATTTCTCGTTCTGTAGCTGGTTCGTATGATAACGAAGCTGTTGCGA 696
Query 616 TTTTCGCTCTTTTGTTGACGTTTTATCTGTTTGTTAAAGCGGTTAACACTGGTTCATTGG 675
|||||||||| ||| ||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 697 TTTTCGCTCTGTTGCTGACGTTTTATCTCTTTGTTAAAGCGGTGAACACTGGTTCATTAG 756
Query 676 CTTGGGCTCTTGGCTCTGCGTTTGGTTACTTTTACATGGTTTCTGCTTGGGGAGGATATG 735
|||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 757 CTTGGGCTCTTGCCTCTGCGTTTGGTTACTTTTATATGGTTTCAGCTTGGGGAGGATATG 816
Query 736 TGTTTATTATCAACTTGGTTCCGCTTTATGTGTTGGTGTTGTTGATCACTGGAAGGTATT 795
|||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 817 TGTTTATTATCAACTTGGTTCCTCTTTACGTGTTGGTGTTGTTGATCACCGGAAGGTATT 876
Query 796 CGATGAGGCTTTACATTGCTTATAACTGTATGTATATCTTGGGGATGTTGCTCGCGATGC 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CGATGAGGCTTTACATTGCTTATAACTGTATGTATATCTTGGGGATGTTGCTCGCGATGC 936
Query 856 AAATTCGGTTTGTTGGTTTTCAACATGTTCAATCTGGTGAGCATATGGGTGCAATGGGCG 915
||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 937 AAATTCGCTTTGTTGGTTTTCAACATGTTCAATCTGGTGAACATATGGGTGCCATGGGTG 996
Query 916 TCTTCTTATTGATGCAGGTGTTTTACTTCTTGGACTGGGTGAAGTACCAGCTCAATGACA 975
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 997 TCTTCTTATTAATGCAGGTGTTTTACTTCTTGGACTGGGTTAAGTACCAGCTCAATGACA 1056
Query 976 CCAAGTTGTTCCAAACCTTTTTGAGGATAACTGTGACATCGGCTATT-TTGGTTGGTGGT 1034
|||||||||||||||| |||||||| ||||||||||||||||||||| || |||||||||
Sbjct 1057 CCAAGTTGTTCCAAACGTTTTTGAGAATAACTGTGACATCGGCTATTCTT-GTTGGTGGT 1115
Query 1035 ATTGCTTTGGGTGTTGGAACAGCGTCTGGCTATATATCTCCATGGACTGGTCGATTTTAC 1094
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 GTTGCTGTGGGTGTTGGAACAGCGTCTGGCTATATATCTCCATGGACTGGTCGATTTTAC 1175
Query 1095 TCGTTGCTTGACCCGACTTATGCAAAGGATCATATTCCCATTATTGCATCTGTTTCTGAG 1154
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1176 TCGTTGCTTGACCCGACTTACGCAAAGGATCATATTCCTATTATTGCATCTGTTTCTGAG 1235
Query 1155 CATCAGCCTACGGCTTGGTCGTCTTTCATGTTTGACTACCATATTCTGCTCTTTCTTTTC 1214
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1236 CATCAGCCTACTGCCTGGTCGTCATTCATGTTTGACTACCATATTCTGCTCTTTCTTTTC 1295
Query 1215 CCTGCGGGTCTTTACTTCTGTTTCAAGCGTTTGACGGATGCTACAATATTTATTGTCATG 1274
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1296 CCTGCGGGTCTTTACTTCTGTTTCAAGCGTTTGACGGATGCTACGATATTTATTGTCATG 1355
Query 1275 TATGGTCTCACTAGCTTGTACTTTGCTGGTGTCATGGTTCGGCTTATTCTCGTCGCTACT 1334
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1356 TATGGTCTCACTAGCTTGTACTTTGCTGGTGTTATGGTTCGGCTTATTCTCGTCGCTACT 1415
Query 1335 CCAGCAGTTTGTCTTATCAGTGCCATAGCTGTCTCTGCCACTGTCAAGAATTTAACTTCT 1394
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1416 CCAGCAGTTTGTCTTATCAGTGCCATAGCTGTCTCTGCCACTATCAAGAATTTAACTTCT 1475
Query 1395 CTGTTAAGGACAAAACAAAAGGTTTCTCAGACTGGTTCCACGAAAGGAGCTGGTAGTTCA 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 CTGTTAAGGACAAAACAAAAGGTTTCTCAGACTGGTTCCACGAAAGGAGCTGGTAGTTCA 1535
Query 1455 AAAGCCTCTTCAAAGGTTACACTTGATCAGTCTCAGCCTTTCCAGAAGAATGGTGCCATT 1514
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 AAAGCTTCTTCAAAGGTTACACTTGATCAGTCTCAGCCTTTCCAGAAGAATGGTGCCATT 1595
Query 1515 GCTCTTCTTCTTGGTGTATTTTATTTGCTGAGTAGATATGCCATTCACTGCACATGGGTG 1574
||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1596 GCTCTTCTTGTTGGTGTATTTTATTTGCTCAGTAGATATGCTATTCACTGCACATGGGTG 1655
Query 1575 ACATCAGAGGCATATTCATCTCCCTCAATTGTCTTAGCTGCAAGAGGAGCCCATGGGAAC 1634
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1656 ACAGCAGAGGCATATTCATCTCCCTCAATTGTCTTAGCTGCAAGAGGAGCCCACGGGAAC 1715
Query 1635 AGAATCATCTTTGATGATTACCGCGAGGCCTACTACTGGCTTAGGCAAAACACTCCCACT 1694
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1716 AGAATCATCTTTGATGATTACCGCGAGGCATACTACTGGCTTAGGCAAAACACTGCCACT 1775
Query 1695 GATGCTAAGATCATGTCGTGGTGGGACTATGGGTACCAAATCACTGCCATGGGAAACAGA 1754
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1776 GATGCTAAGATTATGTCGTGGTGGGACTATGGGTACCAAATCACTGCCATGGGAAATAGA 1835
Query 1755 ACTGTCATCGTCGATAACAATACCTGGAACAACACACATATTGCTACCGTTGGACGTGCC 1814
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1836 ACTGTCATCGTCGATAACAATACCTGGAACAACACTCACATTGCTACCGTTGGACGTGCC 1895
Query 1815 ATGTCTTCTTATGAAGATGAGGCGTATGACATTATGAGGTCACTTGATGTGAACTATGTA 1874
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1896 ATGTCTTCTTATGAAGATGATGCGTATGACATCATGAGGTCACTTGATGTGAACTATGTA 1955
Query 1875 TTGGTCGTCTTTGGTGGTGTTACTGGTTATTCTTCAGATGATATCAACAAGTTCTTGTGG 1934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1956 TTGGTCGTCTTTGGTGGTGTTACTGGTTATTCTTCAGATGATATCAACAAGTTCTTGTGG 2015
Query 1935 ATGGTGAGAATTGGAGGCGGAGTATTCCCAGTGATCAAGGAACCTGATTACCTTGTGAAT 1994
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 2016 ATGGTGAGGATTGGAGGTGGAGTATTCCCAGTGATCAAAGAACCTGATTACCTTGTGAAT 2075
Query 1995 GGTGAATTCCGTGTAGACAAGGGTGCATCACCAAAGATGCTGAACTGTCTTATGTACAAG 2054
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 2076 GGTGAATTCCGTGTAGACAAAGGTGCATCACCGAAGATGCTGAACTGTCTCATGTACAAG 2135
Query 2055 TTATGCTATTACAGGTTCGGTGAGCTGACCACAGAATACGGCAAGCCACCCGGGTATGAT 2114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2136 TTATGCTATTACAGGTTCGGTGAGCTGACCACAGAATACGGCAAGCCACCCGGGTATGAT 2195
Query 2115 AGAGCAAGAGGAGTGGAGATAGGGAACAAAGATATCAAACTTGAACACTTAGAAGAAGCT 2174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 AGAGCAAGAGGAGTGGAGATAGGGAACAAAGATATCAAACTTGAACACTTAGAAGAAGCT 2255
Query 2175 TACACAACATCCAACTGGATAGTTCGCATTTACAGAGTCAAACCTCCTACGAACAGGTTG 2234
|||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||
Sbjct 2256 TACACAACATCCAACTGGATAGTTCGTATTTACAGAGTTAAACCTCCTACAAATAGGTTG 2315
Query 2235 TGACGCTTCAATGTTACGAAAAT 2257
||| ||||||||||||| |||||
Sbjct 2316 TGATGCTTCAATGTTACCAAAAT 2338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111997415895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5