BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922535

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G34245.1 | Symbols: EPF2 | Putative membrane lipoprotein | c...   649    0.0  


> AT1G34245.1 | Symbols: EPF2 | Putative membrane lipoprotein | 
chr1:12472868-12473754 FORWARD LENGTH=608
Length=608

 Score =  649 bits (351),  Expect = 0.0
 Identities = 383/399 (96%), Gaps = 0/399 (0%)
 Strand=Plus/Plus

Query  6    AAAAATATTAAAAACATGACGAAGTTTGTACGCAAGTATATGTTTTGCATCGTCCTAGTC  65
            ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  108  AAAAAGATTATAAACATGACGAAGTTTGTACGCAAGTATATGTTTTGCCTCGTCCTAGTC  167

Query  66   TTCGCCGCGTGTTCTTTGGTCGTTAACTCCATTCGCACGCCGCCACTAAAAATCACGGTC  125
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  168  TTCGCCGCGTGTTCTTTGGTCGTTAACTCCATTCGCACGCCGCCACTAAAAAACACGGTC  227

Query  126  AATGGCGGAGAAAAGAAAAACTCCCATATGGAACAAGCTCAAACGCACCACGAGAAGGAA  185
            ||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||||||
Sbjct  228  AATGGCGGAGAAAAGAAAAACGCCGATATAGAACAAGCTCAAACGCACCACAAGAAGGAA  287

Query  186  ATAGGGAAAAAAGGAGGGGTAGAAATGGAAATGTACCCGACAGGATCAAGCTTACCGGAT  245
            ||| | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  288  ATAAGCAAAAACGGAGGGGTAGAAATGGAAATGTACCCAACAGGATCAAGCTTACCGGAT  347

Query  246  TGTTCATACGCGTGTGGCGCATGCTCGCCGTGTAAACGTGTGATGATTAGTTTCCAATGC  305
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct  348  TGTTCATACGCGTGTGGCGCATGTTCGCCGTGTAAACGTGTGATGATTAGTTTCGAATGC  407

Query  306  TCAGTCGCCGAATCATGTAGCGTCATTTACAGATGCACGTGCAGAGGAAGATACTATCAC  365
            |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct  408  TCAGTCGCCGAATCATGTAGCGTCATCTACAGATGCACGTGCAGAGGGAGATACTATCAC  467

Query  366  GTGCCATCTAGAGCTTGAATTGAATCTCCGCCGTTTATT  404
            |||||||||||||||||||||||||||||||||||||||
Sbjct  468  GTGCCATCTAGAGCTTGAATTGAATCTCCGCCGTTTATT  506



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19101744620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5