BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922541 Length=431 Score E Sequences producing significant alignments: (Bits) Value AT1G14650.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 420 6e-117 AT1G14640.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 303 6e-82 > AT1G14650.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein | chr1:5027662-5030792 FORWARD LENGTH=2789 Length=2789 Score = 420 bits (227), Expect = 6e-117 Identities = 360/421 (86%), Gaps = 22/421 (5%) Strand=Plus/Plus Query 23 CAATGGGGATGATGGACCCACCATCTATGCCTGAAATGCCTCCTCCACCACCACCCGGGG 82 |||||||||||||| | |||||| ||||||||| ||| ||||||| |||||||||| || Sbjct 2102 CAATGGGGATGATGCAACCACCACCTATGCCTGGGATGGCTCCTCCTCCACCACCCGAGG 2161 Query 83 AGGCACCACCGCCTCAACCTGAGGAGCCAGAGCCAAAGAGACAAAAGTTAGATGAGTCAG 142 |||| ||||| |||| |||||||| |||||| |||||||||||||||| |||||||||| Sbjct 2162 AGGCTCCACCACCTCTTCCTGAGGAACCAGAGGCAAAGAGACAAAAGTTCGATGAGTCAG 2221 Query 143 CACTTGTTCCAGAAGACCAATTTCTTTCTCA--A--C--ATCCGG-T----T-A------ 184 | ||||||||||||||||| |||||| |||| | | ||||| | | | Sbjct 2222 CCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGGGTCCGGCTACAATCAGGGTTT 2281 Query 185 CTAAGCCAAACGTGGATGATGGAC-ATGACATTGAGATCATAGTGCAGCCGTTATCTGAA 243 |||||||||||| | ||||||||| || || ||||||| ||||||| ||||||||||| Sbjct 2282 CTAAGCCAAACGAGAATGATGGACAAT-TTATGGAGATCACAGTGCAGTCGTTATCTGAA 2340 Query 244 AACGTGGGAAGTTTGAAGGAGAAAATAGTTGGGGAGATGCAAATTCCAGCAAACAAACAG 303 |||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| Sbjct 2341 AACGTGGGAAGTTTGAAGGAGAAAATAGCTGGGGAGATTCAAATCCCAGCAAACAAACAG 2400 Query 304 AAGTTAAGTGGAAAAGCTGGGTTCTTAAAGGACAACATGTCGCT-GACACATTACAACGT 362 ||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||| || Sbjct 2401 AAGTTGAGTGGAAAAGCAGGGTTCTTAAAGGACAACATGTCGCTTG-CACATTACAATGT 2459 Query 363 GGGAGCAAGAGAAATCCTTACACTGTCTTTGAGAGAACGTGGTGAGTGAAAGAGATAGAG 422 |||||| |||||||||| ||| |||||||||| |||||||||| | ||||||||||||| Sbjct 2460 CGGAGCAGGAGAAATCCTAACATTGTCTTTGAGGGAACGTGGTGGGAGAAAGAGATAGAG 2519 Query 423 A 423 | Sbjct 2520 A 2520 > AT1G14640.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein | chr1:5023656-5025955 FORWARD LENGTH=2208 Length=2208 Score = 303 bits (164), Expect = 6e-82 Identities = 263/308 (85%), Gaps = 18/308 (6%) Strand=Plus/Plus Query 18 GCTTTCAATGGGGATGATGGACCCACCATCTATGCCTGAAATGCCTCCTCCACCACCACC 77 |||||| |||||||||||| | |||||| ||||| |||| ||||||||||| |||||||| Sbjct 1899 GCTTTCGATGGGGATGATGCAACCACCACCTATGGCTGAGATGCCTCCTCCTCCACCACC 1958 Query 78 CGGGGAGGCACCACCGCCTCAACCTGAGGAGCCAGAGCCAAAGAGACAAAAGTTAGATGA 137 |||||||||||||||||||| |||||||||||||||||||| ||||| ||| | ||||| Sbjct 1959 CGGGGAGGCACCACCGCCTCTTCCTGAGGAGCCAGAGCCAAAAAGACAGAAGCTCGATGA 2018 Query 138 GTCAGCACTTGTTCCAGAAGACCAATTTCTTTCTCAACATCCGG-T-----TAC--T-A- 187 |||||| ||||||||||||||||| |||||| |||| ||||||| | ||| | | Sbjct 2019 GTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGGGTCCGGCTACAATCAG 2078 Query 188 -------A-GCCAAACGTGGATGATGGACATGACATTGAGATCATAGTGCAGCCGTTATC 239 | |||||||| | |||||||||| | ||| ||||||| ||||||| ||||||| Sbjct 2079 GGTTTCTAAGCCAAACGAGAATGATGGACAAGTCATGGAGATCACAGTGCAGTCGTTATC 2138 Query 240 TGAAAACGTGGGAAGTTTGAAGGAGAAAATAGTTGGGGAGATGCAAATTCCAGCAAACAA 299 ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 2139 CGAAAACGTGGGAAGTTTGAAGGAGAAAATAGCTGGGGAAATGCAAATTCCAGCAAACAA 2198 Query 300 ACAGAAGT 307 |||||||| Sbjct 2199 ACAGAAGT 2206 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20458973843 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5