BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922541
Length=431
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14650.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 420 6e-117
AT1G14640.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 303 6e-82
> AT1G14650.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein |
chr1:5027662-5030792 FORWARD LENGTH=2789
Length=2789
Score = 420 bits (227), Expect = 6e-117
Identities = 360/421 (86%), Gaps = 22/421 (5%)
Strand=Plus/Plus
Query 23 CAATGGGGATGATGGACCCACCATCTATGCCTGAAATGCCTCCTCCACCACCACCCGGGG 82
|||||||||||||| | |||||| ||||||||| ||| ||||||| |||||||||| ||
Sbjct 2102 CAATGGGGATGATGCAACCACCACCTATGCCTGGGATGGCTCCTCCTCCACCACCCGAGG 2161
Query 83 AGGCACCACCGCCTCAACCTGAGGAGCCAGAGCCAAAGAGACAAAAGTTAGATGAGTCAG 142
|||| ||||| |||| |||||||| |||||| |||||||||||||||| ||||||||||
Sbjct 2162 AGGCTCCACCACCTCTTCCTGAGGAACCAGAGGCAAAGAGACAAAAGTTCGATGAGTCAG 2221
Query 143 CACTTGTTCCAGAAGACCAATTTCTTTCTCA--A--C--ATCCGG-T----T-A------ 184
| ||||||||||||||||| |||||| |||| | | ||||| | | |
Sbjct 2222 CCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGGGTCCGGCTACAATCAGGGTTT 2281
Query 185 CTAAGCCAAACGTGGATGATGGAC-ATGACATTGAGATCATAGTGCAGCCGTTATCTGAA 243
|||||||||||| | ||||||||| || || ||||||| ||||||| |||||||||||
Sbjct 2282 CTAAGCCAAACGAGAATGATGGACAAT-TTATGGAGATCACAGTGCAGTCGTTATCTGAA 2340
Query 244 AACGTGGGAAGTTTGAAGGAGAAAATAGTTGGGGAGATGCAAATTCCAGCAAACAAACAG 303
|||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||
Sbjct 2341 AACGTGGGAAGTTTGAAGGAGAAAATAGCTGGGGAGATTCAAATCCCAGCAAACAAACAG 2400
Query 304 AAGTTAAGTGGAAAAGCTGGGTTCTTAAAGGACAACATGTCGCT-GACACATTACAACGT 362
||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||| ||
Sbjct 2401 AAGTTGAGTGGAAAAGCAGGGTTCTTAAAGGACAACATGTCGCTTG-CACATTACAATGT 2459
Query 363 GGGAGCAAGAGAAATCCTTACACTGTCTTTGAGAGAACGTGGTGAGTGAAAGAGATAGAG 422
|||||| |||||||||| ||| |||||||||| |||||||||| | |||||||||||||
Sbjct 2460 CGGAGCAGGAGAAATCCTAACATTGTCTTTGAGGGAACGTGGTGGGAGAAAGAGATAGAG 2519
Query 423 A 423
|
Sbjct 2520 A 2520
> AT1G14640.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein | chr1:5023656-5025955 FORWARD
LENGTH=2208
Length=2208
Score = 303 bits (164), Expect = 6e-82
Identities = 263/308 (85%), Gaps = 18/308 (6%)
Strand=Plus/Plus
Query 18 GCTTTCAATGGGGATGATGGACCCACCATCTATGCCTGAAATGCCTCCTCCACCACCACC 77
|||||| |||||||||||| | |||||| ||||| |||| ||||||||||| ||||||||
Sbjct 1899 GCTTTCGATGGGGATGATGCAACCACCACCTATGGCTGAGATGCCTCCTCCTCCACCACC 1958
Query 78 CGGGGAGGCACCACCGCCTCAACCTGAGGAGCCAGAGCCAAAGAGACAAAAGTTAGATGA 137
|||||||||||||||||||| |||||||||||||||||||| ||||| ||| | |||||
Sbjct 1959 CGGGGAGGCACCACCGCCTCTTCCTGAGGAGCCAGAGCCAAAAAGACAGAAGCTCGATGA 2018
Query 138 GTCAGCACTTGTTCCAGAAGACCAATTTCTTTCTCAACATCCGG-T-----TAC--T-A- 187
|||||| ||||||||||||||||| |||||| |||| ||||||| | ||| | |
Sbjct 2019 GTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGGGTCCGGCTACAATCAG 2078
Query 188 -------A-GCCAAACGTGGATGATGGACATGACATTGAGATCATAGTGCAGCCGTTATC 239
| |||||||| | |||||||||| | ||| ||||||| ||||||| |||||||
Sbjct 2079 GGTTTCTAAGCCAAACGAGAATGATGGACAAGTCATGGAGATCACAGTGCAGTCGTTATC 2138
Query 240 TGAAAACGTGGGAAGTTTGAAGGAGAAAATAGTTGGGGAGATGCAAATTCCAGCAAACAA 299
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 2139 CGAAAACGTGGGAAGTTTGAAGGAGAAAATAGCTGGGGAAATGCAAATTCCAGCAAACAA 2198
Query 300 ACAGAAGT 307
||||||||
Sbjct 2199 ACAGAAGT 2206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20458973843
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5