BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922568
Length=1981
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34550.1 | Symbols: EMB2756 | Protein of unknown function (D... 3116 0.0
AT4G09630.1 | Symbols: | Protein of unknown function (DUF616) ... 1262 0.0
> AT1G34550.1 | Symbols: EMB2756 | Protein of unknown function
(DUF616) | chr1:12646696-12652646 REVERSE LENGTH=2600
Length=2600
Score = 3116 bits (1687), Expect = 0.0
Identities = 1898/1993 (95%), Gaps = 41/1993 (2%)
Strand=Plus/Plus
Query 3 CTCATCGTCGACGACAATGCTAAAATGGCTCAATTTAGACAATC-GG---AG--AGATTT 56
||||||| |||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 259 CTCATCGACGACGACAATGCTAAAATGGCTCAATTTAGACAATCGGGAACAGATAGATTT 318
Query 57 AGTGTTCGCGG---CGGCGGAGCAGCTTCTTCTGATCACGTAACGATCGGGATCCGAAAC 113
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 319 AGTGTTCGCGGCAACGGCGGAGGAGCTTCTTCTGATCACGTAACGATCGGGATCCGAAAC 378
Query 114 GGCGTCGGTGGAG---CTAAAGGTAACAACAACAACCGGTGGCGACGATCCGTGAGAGCT 170
||||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 379 GGCGTCGGTGGAGCTACTAAAGGTAACAACAAC-A--GGTGGCGAAGATCCGTGAGAGCT 435
Query 171 GATAAGATTCGTCGACTTGGAATCGGTTCTGTTGTGTTTGTTCTTTGCTTTGTGCTTGTT 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 436 GATAAGATTCGTCGACTTGGAATCGGTTCTGTTGTGTTTGTTCTTTGCTTTGTGCTTCTT 495
Query 231 GTTACTCTTCTCGCTTACTATTATATCTCTGGGTTTACTTATAATAGCTACGATGATAAA 290
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GTTACTGTTCTCGCTTACTGTTATATCTCTGGGTTTACTTATAATAGCTACGATGATAAA 555
Query 291 GGATTTGTTGATTCATATGAAGGTGATTTTTTGACGAATGTGACTAGAATAGATCCTTCG 350
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 556 GGATTTGTTGATTCATATGAGGGTGATTTTTTGACGAATGTGACTAGATTAGATCCTTCG 615
Query 351 AAAGTGCTTGAGTTTGGTCAAGGTTCAGTGATTCATGGACGAGATTCGAGGTATTGGGAT 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 AAAGTGCTTGAGTTTGGTCAAGGTTCAGTGATTCATGGACGAGATTCGAGGTATTGGGAT 675
Query 411 AAAGATGATAGAAGAAGAGATGATGATTATAATGAGGATGAAGTGAAAAAGGATGT---A 467
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 676 AAAGATGATAGAAGAAGAGATGATGATTATAATGAGGATGAAGTGAAAAAGGATGTACAA 735
Query 468 CAAGTTCACAATCCTGTGAAAGGGATTGGTTTGTATAATGAAGCTGGAAGGAATGAGTTA 527
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 736 CAAGTTCATAATCCTGTGAAGGGGATTGGTTTGTATAATGAAGCTGGAAGGAATGAGTTG 795
Query 528 AAGATGTATGAAGCTGAGTATCAAGCTACGCTTGGGAAAGGTGGTCATGAGAGAAACGGT 587
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 796 AAGATGTATGAAGCTGAGTATAAAGCTACGCTTGGGAAAGGTGGTCATGAGA-AAA---- 850
Query 588 GTGCAGCGTCATGAGGGTGTtgatatggatcgtgaggatgatgatgggattgattctcat 647
| | ||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct 851 ----A-C--AATGAGGGAGTTGATAGGGATCGTGAGGATGATGATGCGATTGATTCTCAT 903
Query 648 gatggggatgaatatgttgattctgggcatgaggatgaGAATGAAGAGGCGCATAAAGAG 707
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 904 GATGGGGATGAATATGTTGATTCTGGGCATGAGGATGATAATGAAGAGGTGCATAAAGAG 963
Query 708 AAGGTTGGTGAGGTTGTTCATATGGTGACTAAGCAAGAGAATATGGAGAAGGATGATGGA 767
| ||||||||||| ||||||| |||||||||||| |||| ||||||||||||
Sbjct 964 -A--------AGGTTGTTCATTTGGTGACCAAGCAAGAGAATGTGGACAAGGATGATGGA 1014
Query 768 GGTATTTCAAAAAGGTCACTTGGGGATTCTTATCTTGTTAGTAAGGGTGGTAAGTCCGGG 827
||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1015 GGTGTTTCAAAAATGTCACTTGGGGATTCTTCTCTTGTTAGTAAGGGTGGTAAGTCTGGG 1074
Query 828 AAAACATCACGGTCTGATAC-AAAGAGAAGAGGTCGTCGCAGATCTTCAGGTTCATGTGA 886
||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1075 AAAACATCACGATCTGATACTAAA-AGAAGAGGTCGTCGCAGATCTTCAGGTTCATGTGA 1133
Query 887 AATGAAGCTATTGAATTCGAGTCAACAAATAGTGGAGCCCTTGAATACTCGAAAATCTGC 946
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1134 AATGAAGCTATTGAATTCTAGTCAACCAATAGTGGAGCCCTTGAATACTCGAAAATCTGC 1193
Query 947 TAGATTCTCTTTACAGTACATAGAGAAGGAAGATAAGCCTGATGGAGAAGAACAGTGGGA 1006
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1194 TAGATTTTCTTTACAGTACATAGAGAAGGAAGATAAGCCTGATGAAGAAGAACAGTGGGA 1253
Query 1007 GCCTAGATTTGCAGGTCATCAGAGTTTACAGGAGCGAGAAGATTCCTTCGTGGCTGAAGA 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1254 GCCTAGATTTGCAGGTCATCAGAGTTTACAGGAGCGAGAAGATTCCTTCGTGGCTCAAGA 1313
Query 1067 CAAGAAAATTCATTGTGGCTTTGTCAAAGGCCCCAAAGGATCTCCAAGCACTGGATTTGA 1126
||||||||||||||| |||||||||||||| |||||||||||| |||||||||| |||||
Sbjct 1314 CAAGAAAATTCATTGCGGCTTTGTCAAAGGTCCCAAAGGATCTTCAAGCACTGGGTTTGA 1373
Query 1127 CCTGACAGAAGATGATACTAATTATATCAGTAGATGCCACATCGCTGTGATCTCATGTAT 1186
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct 1374 CCTGACAGAAGATGATACTAATTATATCAGTAGATGCCACATCGCTGTTAGCTCATGCAT 1433
Query 1187 CTTTGGCAATTCTGATCGCTTGAGGCCTCCTGCCAACAAAATGATAAGTAGGTTGTCAAG 1246
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1434 CTTTGGCAATTCTGATCGTTTGAGGCCTCCTGCCAACAAAATGATAAGTCGGTTGTCGAG 1493
Query 1247 AAAAAATGTGTGCTTCATTGTGTTTGTGGACGAGATTACCATGCAAACACTTTCTGCAGA 1306
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1494 AAAAAATGTATGCTTCATTGTGTTCGTGGACGAGATTACCATGCAAACACTTTCTGCAGA 1553
Query 1307 AGGACATGCCCCAGACAGAGCAGGATTCATTGGTCTGTGGAAGTTGGTTGTCGTGAAGAA 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 AGGACATGCCCCAGACAGAGCAGGATTCATTGGTCTGTGGAAGTTGGTTGTCGTGAAGAA 1613
Query 1367 TCTTCCTTATGCAGATATGCGGAGGGTAGGAAAAATACCAAAAATGTTGCCACACCGACT 1426
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 TCTTCCTTACGCAGATATGCGGAGGGTAGGAAAAATACCAAAAATGTTGCCACACCGACT 1673
Query 1427 TTTCCCATCAGCAAGGTACTCAATCTGGTTGGACAGCAAGTTACGACTTCAGTTGGACCC 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 TTTCCCATCAGCAAGGTACTCAATCTGGTTGGACAGCAAGTTACGACTTCAGTTGGACCC 1733
Query 1487 ACTGCTCATTCTGGAGTACTTTCTATGGCGTAAAGGTCACGAGTATGCTATATCCAATCA 1546
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1734 ACTACTCATTCTGGAGTACTTCCTATGGCGTAAAGGTCACGAGTATGCTATATCCAATCA 1793
Query 1547 CTATGACCGTCATTGTTTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAAGTATAA 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 CTATGACCGTCATTGTTTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAAGTATAA 1853
Query 1607 CCATACTGTTATTAATCAACAGTTTCAGTTTTACAAGGCTGATGGGCTAACCAGATTCAA 1666
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1854 CCATACTGTTATTAATCAACAGTTTCAGTTTTACAAGGCTGATGGGCTGACCAGATTCAA 1913
Query 1667 CGCGTCGGATCCGTTCAAGCTTCTTCCTAGCAATGTTCCAGAGGGGTCTTTCATAGTACG 1726
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 TGCTTCGGATCCGTTCAAGCTTCTTCCTAGCAATGTTCCAGAGGGGTCTTTCATAGTACG 1973
Query 1727 AGCTCATACTCCCATGTCGAATCTATTCTCTTGTCTTTGGTTCAATGAAGTAGAACGCTT 1786
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 1974 AGCTCATACTCCCATGTCGAACCTATTCTCATGTCTTTGGTTCAATGAAGTGGAACGCTT 2033
Query 1787 CACTCCCCGGGACCAGCTGAGCTTTGCCTATACTTACCAGAAACTAAGAAGGATGAATCC 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 CACTCCCCGGGACCAGCTGAGCTTTGCCTATACTTACCAGAAACTAAGAAGGATGAATCC 2093
Query 1847 TGATAAACCATTTAATCTTCACATGTTCAAGGACTGTGAGAGAAGAAAGATTGCAAAGTT 1906
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2094 TGATAAACCATTTAATCTTCACATGTTCAAGGACTGTGAGAGAAGAAAAATTGCAAAGTT 2153
Query 1907 GTTCCGTCACAGATCAGACGAGAAGCGAAACCTTATACAAGCAGCAATACAATAAACAAC 1966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 GTTCCGTCACAGATCAGACGAGAAGCGAAACCTTATACAAGCAGCAATACAATAAACAAC 2213
Query 1967 TCTATGTTGTACC 1979
|||||||||||||
Sbjct 2214 TCTATGTTGTACC 2226
> AT4G09630.1 | Symbols: | Protein of unknown function (DUF616)
| chr4:6083713-6088134 FORWARD LENGTH=2615
Length=2615
Score = 1262 bits (683), Expect = 0.0
Identities = 1055/1234 (85%), Gaps = 28/1234 (2%)
Strand=Plus/Plus
Query 734 GACTAAGCAAGAGAATATGGAGAAGGATGATGGAGGTATTTCAAAAAGGTCACTTGGGGA 793
||| ||||| |||| || || |||| | |||||| || |||||||||||||| |||| |
Sbjct 1053 GACCAAGCATCAGAAAATTGAAAAGGTTCATGGAGCTACTTCAAAAAGGTCACGTGGGAA 1112
Query 794 TTCTTATCTTGTTAGTAAGGGTGGTAAGTCCGGGAAAACATCACGGTCTGATACAAAGAG 853
|||| |||| | | | |||||||||| ||||||||||| | ||||| |||| ||
Sbjct 1113 GTCTTCTCTT-CT--T-A--GTGGTAAGTCGGGGAAAACATCGCAAACTGATGCAAAAAG 1166
Query 854 AAGAGGTC---GTCGCAGATCTTCA-G-GT-TCATGTGAAATGAAGCTATTGAATTCGAG 907
||||| || ||| ||||| |||| | || || ||||| |||||||| |||||||| ||
Sbjct 1167 AAGAGCTCGAAGTCACAGATTTTCAGGCGTATCTTGTGAGATGAAGCTGTTGAATTCCAG 1226
Query 908 TCAACAAATAGTGGAGCCCTTGAATACTCGAAAA-TCTGCTAG-ATTCTCTTTACAGTAC 965
|||||||||| ||||| ||||| |||| |||| | |||| | | ||| ||||| |||
Sbjct 1227 TCAACAAATACAAGAGCCTTTGAAAACTC-AAAATTTTGCT-GCACCCTCCTTACAATAC 1284
Query 966 ATAGAGAAGGAAGATAAGCCTGATGGAGAAGAACAGTGGGAGCCTAGATTTGCAGGTCAT 1025
||| ||| ||| ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1285 ATACAGATGGAGGATAAACCTGATGGAGAAGAACAGTGGGAGCCTAAATTTGCAGGTCAC 1344
Query 1026 CAGAGTTTACAGGAGCGAGAAGATTCCTTCGTGGCTGAAGA-CAAGAAAATTCATTGTGG 1084
|||||||||||||| |||||||| || ||| ||| | |||| | ||||||| ||||||||
Sbjct 1345 CAGAGTTTACAGGAACGAGAAGACTCTTTCTTGGTTCAAGAGC-AGAAAATCCATTGTGG 1403
Query 1085 CTTTGTCAAAGGC-CCCAAAGGATCT-CCAAGCACTGGATTTGACCTGACAGAAGATGAT 1142
|||||||||| || || |||||| | |||||||||||||||||||||||||||||||||
Sbjct 1404 CTTTGTCAAA-GCTCCTGAAGGAT-TGCCAAGCACTGGATTTGACCTGACAGAAGATGAT 1461
Query 1143 ACTAATTATATCAGTAGATGCCACATCGCTGTGATCTCATGTATCTTTGGCAATTCTGAT 1202
|||| |||||||||| ||| ||||| |||||||| || ||||||||||| || ||||||
Sbjct 1462 GCTAACTATATCAGTAAATGTCACATTGCTGTGATATCCTGTATCTTTGGAAACTCTGAT 1521
Query 1203 CGCTTGAGGCCTCCTGCCAACAAAATGATAAGTAGGTTGTCAAGAAAAAATGTGTGCTTC 1262
|||||||||| |||||| || |||||| ||||||| |||||||||||| |||| ||||||
Sbjct 1522 CGCTTGAGGCATCCTGCTAATAAAATGGTAAGTAGTTTGTCAAGAAAAGATGTTTGCTTC 1581
Query 1263 ATTGTGTTTGTGGACGAGATTACCATGCAAACACTTTCTGCAGAAGGACATGC-CCCAGA 1321
|||||||||||||||||||||||||||||||||||||||| ||||| || | ||| ||
Sbjct 1582 GTTGTGTTTGTGGACGAGATTACCATGCAAACACTTTCTGCCGAAGGCCAAGTACCC-GA 1640
Query 1322 CAGAGCAGGATTCATTGGTCTGTGGAAGTTGGTTGTCGTGAAGAATCTTCCTTATGCAGA 1381
| |||| |||||| |||||||||||||||||||||| |||| |||||||||||| ||||
Sbjct 1641 CGGAGCTGGATTCGTTGGTCTGTGGAAGTTGGTTGTGGTGAGGAATCTTCCTTACACAGA 1700
Query 1382 TATGCGGAGGGTAGGAAAAATACCAAAAATGTTGCCACACCGACTTTTCCCATCAGCAAG 1441
||||||||||||||| |||||||||||| |||| |||||| |||||||| | || |||||
Sbjct 1701 TATGCGGAGGGTAGGGAAAATACCAAAACTGTTACCACACAGACTTTTCACTTCGGCAAG 1760
Query 1442 GTACTCAATCTGGTTGGACAGCAAGTTACGACTTCAGTTGGACCCACT-GCTCATTCTGG 1500
|||||||||||||||||||||||||||||| || ||||||||||| || | ||||| |||
Sbjct 1761 GTACTCAATCTGGTTGGACAGCAAGTTACGTCTCCAGTTGGACCCCCTAG-TCATTTTGG 1819
Query 1501 AGTACTTTCTATGGCGTAAAGGTCACGAGTATGCTATATCCAATCACTATGACCGTCATT 1560
| |||||||| |||||| |||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 1820 AATACTTTCTGTGGCGTGAAGGGCACGAGTATGCTATCTCCAATCACTATGACCGCCATT 1879
Query 1561 GTTTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAAGTATAACCATACTGTTATTA 1620
| |||||||||| ||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 1880 GCCTATGGGAAGAAGTTGCACAAAACAAGAAGCTGAACAAGTACAATCACACTGTCATTG 1939
Query 1621 ATCAACAGTTTCAGTTTTACAAGGCTGATGGGCTAACCAGATTCAACGCGTCGGATCCGT 1680
|||| |||||| |||||||| || |||| ||||| || |||||||| || || |||||
Sbjct 1940 ATCAGCAGTTTGAGTTTTACCAGTCTGACGGGCTGACGAGATTCAATGCTTCAGATCCCC 1999
Query 1681 TCAAGCTTCTTCCTAGCAATGTTCCAGAGGGGTCTTTCATAGTACGAGCTCATACTCCCA 1740
|||||||||||| |||||||||||||| ||||||||||| ||||| | ||||| ||||
Sbjct 2000 ACAAGCTTCTTCCCAGCAATGTTCCAGAAGGGTCTTTCATTGTACGGGAACATACCCCCA 2059
Query 1741 TGTCGAATCTATTCTCTTGTCTTTGGTTCAATGAAGTAGAACGCTTCACTCCCCGGGACC 1800
|||| || |||||||| |||||||||||||| ||||| || |||||||||||||| || |
Sbjct 2060 TGTCAAACCTATTCTCCTGTCTTTGGTTCAACGAAGTTGAGCGCTTCACTCCCCGAGATC 2119
Query 1801 AGCTGAGCTTTGCCTATACTTACCAGAAACTAAGAAGGATGAATCCTGATAAACCATTTA 1860
|||| |||||||| || |||||||||||| ||| ||||||||||||||| | |||||||
Sbjct 2120 AGCTAAGCTTTGCATACACTTACCAGAAATTAACAAGGATGAATCCTGACACTCCATTTA 2179
Query 1861 ATCTTCACATGTTCAAGGACTGTGAGAGAAGAAAGATTGC-AAAGTTGTTCCGTCACAGA 1919
||||||||||||||||||| || ||||| ||||| || | ||| ||||| |||||||||
Sbjct 2180 ATCTTCACATGTTCAAGGATTGCGAGAGGAGAAAAATCACCAAA-TTGTTTCGTCACAGA 2238
Query 1920 TCAGACGAGAAGCGAAACCTTATACAAGCAGCAA 1953
||||| ||||||||||||||||||||||||||||
Sbjct 2239 TCAGAGGAGAAGCGAAACCTTATACAAGCAGCAA 2272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98142065475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5