BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922589
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31240.1 | Symbols: | Bromodomain transcription factor | ch... 1179 0.0
> AT1G31240.1 | Symbols: | Bromodomain transcription factor |
chr1:11163858-11164928 REVERSE LENGTH=1071
Length=1071
Score = 1179 bits (638), Expect = 0.0
Identities = 799/875 (91%), Gaps = 17/875 (2%)
Strand=Plus/Plus
Query 3 TCAAAA--TCTCCACCACCAATGAAGCGACGACGCCGTAACTCCAAACTTAAATTCGAAG 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 TCAAAATCTCTCCACCACCAATGAAGCGACGACGCCGTAACTCCAAACTTAAATTCGAAG 70
Query 61 AATCCTCCGACCAATCACCGGCAACCACGGCGGAGTTCTCCTTCTCTCTTACCAAAATCG 120
|| ||||||||||||||||| || ||||||| ||||||||||||||||| ||||||||||
Sbjct 71 AAACCTCCGACCAATCACCGACATCCACGGCAGAGTTCTCCTTCTCTCTCACCAAAATCG 130
Query 121 CCGTCAGTCAAATCTGCCAATCTATTGGATACAAAGCCACAGATTCCTCCGCTCTCAACA 180
||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 131 CCGTCAGCCAAATCTGCCAATCTATTGGATACAAAGCCACCGATGCCTCCGCTCTCAACA 190
Query 181 CTCTAACCCTAACCACCACCAAATTCTTACAATCCCTCGCCGAACTCGCAGCGTCGTTCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 191 CTCTAACCCTAACCACCACCAAATTCTTACAATCCCTCGCCGAACTCGCATCGTCGTTCT 250
Query 241 CTAACACCGCTAATCGAACAGAGGTTAACCTCTTCGACATCGTCAACGGTCTCCAAGATA 300
|||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||
Sbjct 251 CTAACACCGCTAATCGCACGGAGGTTAATCTCTTCGACATCGTCAATGGTCTCCAAGATA 310
Query 301 TCGCTTTGTCTACTTCCGATTGTTTCCCCGGCGGATCCACCGTGCACGATATTGAATCTC 360
||||||| ||||||||||||||||||||||| || || || || ||||||||||||||||
Sbjct 311 TCGCTTTATCTACTTCCGATTGTTTCCCCGGTGGCTCTACGGTTCACGATATTGAATCTC 370
Query 361 ATTGCTTGATCAAATCAGCTGTTCTTCGTAACCTCTCCGATTTCGTTGCCTACGCTCCTG 420
| ||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 371 AGTGCCTGATCAAATCCGCTGTTCTCCGTAACCTCTCCGATTTCGTTACCTACGCTCCTG 430
Query 421 AAATTCCTTTTGCTAAGCCGTTACCGAGACGAGAAAGAGACGGATCGTTAGGAGGAGATT 480
| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 431 AGATTCCTTTCGCTAAACCGTTACCGAGACGGGAAAGAGACGGATCGTTCGGAGGAGATT 490
Query 481 TGGATCAAGCGCCGGTGACTCAATCGGTGGAGGTGAAGTCTGTTCCAGCTTGGCTTCCTC 540
||||||| | | ||||||||| ||||||||| |||| ||| ||||||||||||||||| |
Sbjct 491 TGGATCACGTGGCGGTGACTCGATCGGTGGATGTGACGTCAGTTCCAGCTTGGCTTCCGC 550
Query 541 CTTTCCCAGA-TGCTAGTCTCTGCTCCGAACGATGTAT-AAAGGATA---GATCTGATCA 595
|||| || || | |||||||||||||||| || ||| | |||||||| ||||||||||
Sbjct 551 CTTTTCCTGACT-CTAGTCTCTGCTCCGATCGTTGT-TCAAAGGATAATAGATCTGATCA 608
Query 596 TTTGTGGGAAAACTCTGATTCCGTTATT-GACCGTGAAATTTTGCCGGAGAGTTTGCAAT 654
||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 609 CTTGTGGGAAAACTCTGATTCCGTTATTCG-CCGTGAAATTTTGCCGGAGAGTTTGAAAT 667
Query 655 CTAAAATCGGAGGAAGATTACCGGTAAGGAGAGA-AAGAGTGAGATTCAAGATGGATCAA 713
|||||| |||||||||||||||||||| |||||| || |||||||||||||||||| |||
Sbjct 668 CTAAAAGCGGAGGAAGATTACCGGTAATGAGAGATAA-AGTGAGATTCAAGATGGAACAA 726
Query 714 CGAGATTGGAGT-GATGGTGGTGATACGAGATTGGAGCGGTGGCGGGATAATCACGACGG 772
|||||||||||| | |||||||||||||||||||||||||| |||||| ||| || | ||
Sbjct 727 CGAGATTGGAGTAG-TGGTGGTGATACGAGATTGGAGCGGTCGCGGGACAATAACAATGG 785
Query 773 CGAATCTGGCGGTGGAG-TTGAGGTTAAGAAGAAAATTAGAGAAGGATACAATTACTGTA 831
|||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 786 CGAATCTGGCCGTG-ATCTTGAGGTTAAGAAGAAAATTAGAGAAGGATACACTTACTGTG 844
Query 832 CCGGCGAGTGGCCGATTTAATTTATTCTGGTGACG 866
|||||||||||||| |||| | ||||||| |||||
Sbjct 845 CCGGCGAGTGGCCGTTTTAGTCTATTCTGATGACG 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42498088362
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5