BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922595

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G31175.1 | Symbols:  | unknown protein; Has 20 Blast hits to...   577    4e-164
  AT5G14210.1 | Symbols:  | Leucine-rich repeat protein kinase fa...   394    4e-109


> AT1G31175.1 | Symbols:  | unknown protein; Has 20 Blast hits 
to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:11140549-11142630 FORWARD 
LENGTH=1993
Length=1993

 Score =  577 bits (312),  Expect = 4e-164
 Identities = 424/473 (90%), Gaps = 28/473 (6%)
 Strand=Plus/Plus

Query  1     CTTTGGAATTACGCAGGAAAATGGCTAAAAGAGAGGACGATGTGTACAACTTTGGATTCA  60
             ||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  1403  CTTTGGAATTATGCAGGAAAATGGCTAAAACAGAGGGCGATGTGTACAACTTTGGATTCA  1462

Query  61    TACTTCTGGAATCTCTGATAGGACCAGTGCCTACTAC-AAAAGGAGAGGCCTATCTTCTC  119
             |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct  1463  TACTTCTGGAATCTCTGATAGGACCAGTACCTACTACAAAAAGGAGAGGCCTATCTTCTC  1522

Query  120   AACGAAATGGTATCAAATA--GaaaaaaaaaGAAAGCAATCTTCATCATTGTTATTTGCT  177
             ||||||||||||||| |||  | ||| ||||| ||||||     |||        || | 
Sbjct  1523  AACGAAATGGTATCATATAGGGTAAAGAAAAG-AAGCAA-----ATC--------TT-C-  1566

Query  178   TTAAATCATGGTGGTTAATAGCTGTTGCTGCAATGTTGCATTTGCAGACGTCATTTGGGA  237
                 |||||  | ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1567  ----ATCAT--T-GTTAATAGCTGTTGCTGCAATGTTGTATTTGCAGACGTCATTTGGGA  1619

Query  238   GCCAAGACGGTTGGCAGAAAACAGTAAGTCCAACGGTCCTAACAACAAGCTCGCGGGAGT  297
             |||||||| || | ||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct  1620  GCCAAGACTGTCGACAGAAAATAGGAAGTCCAACGGTCCTAACAACAAGCTCGCAGGAGT  1679

Query  298   CTTTA-TCGATTGCCATCTCAATCGCCAATAAATGTGTTTTGCTTGAACCTTCTGCAAGA  356
             |||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1680  CTTTACCCAATTGCCATCTCAATCGCCAATAAATGTGTTTTGCTTGAACCTTCTGCAAGA  1739

Query  357   CCTTCCTTTGAAGATGTTCTCCGGAACTTACAATATGCATCTCAAATGCAGTCTGCCGCA  416
             | ||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct  1740  C-TTCCTTTAAAGATGTTCTCTGGAACTTACCATATGCAGCTCAAATGCAGTCTGCCGCA  1798

Query  417   GACGCTGAACGCAAATCTGATACGTCGTCGTGAATCCAAAGGCTAACCTGATG  469
             |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1799  GACGCTGAACGCAAATCTGATAAGTCGTCGTGAATCCAAAGGCTAACCTGATG  1851


> AT5G14210.1 | Symbols:  | Leucine-rich repeat protein kinase 
family protein | chr5:4578378-4581374 REVERSE LENGTH=2453
Length=2453

 Score =  394 bits (213),  Expect = 4e-109
 Identities = 235/246 (96%), Gaps = 0/246 (0%)
 Strand=Plus/Plus

Query  224   GACGTCATTTGGGAGCCAAGACGGTTGGCAGAAAACAGTAAGTCCAACGGTCCTAACAAC  283
             ||| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||
Sbjct  2103  GACATCATTTGGGAGCCAAGACGGTCGGCAGAAAATAGTAAGTCCAACAGTCCTAACAAC  2162

Query  284   AAGCTCGCGGGAGTCTTTATCGATTGCCATCTCAATCGCCAATAAATGTGTTTTGCTTGA  343
             |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  2163  AAGCTCGCAGGAGTCTTTATCGATTGCGATCTCAATCGCCAATAAATGTGTTTTGCTTGA  2222

Query  344   ACCTTCTGCAAGACCTTCCTTTGAAGATGTTCTCCGGAACTTACAATATGCATCTCAAAT  403
             |||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |||||||
Sbjct  2223  ACCTTCCGCAAGACCTTCCTTTGAAGATGTTCTCTGGAACTTACAATACGCAGCTCAAAT  2282

Query  404   GCAGTCTGCCGCAGACGCTGAACGCAAATCTGATACGTCGTCGTGAATCCAAAGGCTAAC  463
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2283  GCAGTCTGCCGCAGACGCTGAACGCAAATCTGATACGTCGTCGTGAATCCAAAGGCTAAC  2342

Query  464   CTGATG  469
             || |||
Sbjct  2343  CTAATG  2348


 Score =  180 bits (97),  Expect = 1e-44
 Identities = 107/112 (96%), Gaps = 0/112 (0%)
 Strand=Plus/Plus

Query  17    GAAAATGGCTAAAAGAGAGGACGATGTGTACAACTTTGGATTCATACTTCTGGAATCTCT  76
             ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1992  GAAAAAGGCTAAAAGAGAGGACGATGTGTACAACTTCGGATTCATACTTCTGGAATCTCT  2051

Query  77    GATAGGACCAGTGCCTACTACAAAAGGAGAGGCCTATCTTCTCAACGAAATG  128
             ||||||||||||||| ||||||||||||||||| | ||||||||||||||||
Sbjct  2052  GATAGGACCAGTGCCCACTACAAAAGGAGAGGCTTTTCTTCTCAACGAAATG  2103



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22303961268


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5