BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922605
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31150.1 | Symbols: | Domain of unknown function (DUF1985) ... 1240 0.0
AT1G31140.2 | Symbols: GOA | GORDITA | chr1:11117993-11119785 F... 147 2e-34
> AT1G31150.1 | Symbols: | Domain of unknown function (DUF1985)
| chr1:11120097-11122587 FORWARD LENGTH=2197
Length=2197
Score = 1240 bits (671), Expect = 0.0
Identities = 744/778 (96%), Gaps = 9/778 (1%)
Strand=Plus/Plus
Query 1 CGCTTGCTCATTTGAATGACATGAAGGAGTGGATACTGAAACAGAATGAAGACCTTAGAA 60
|||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1268 CGCTTGCTTACTTGAATGACATGAAGGAGTGGATACTGAAACAGAATCAAGACCTTAGAA 1327
Query 61 ACAAGATTAGGGAGGATGTTAAAGAAA---TTGTTGGTCCCAAAACACCCGCAGGAGGAG 117
||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 1328 ACAAGATTAGGGAGGATGTTAAAGAAATTGTTGTTGGTCCCAAATCACCAGCAGGAGGAG 1387
Query 118 CATCCAATCTGCGCCGATCAAGCAGGCTTAACACCAATCA-TAAGAGAAAGACTGATGCA 176
|||| |||||||| | ||||| ||||||||||||||| || |||| ||||||||||||||
Sbjct 1388 CATCTAATCTGCGTCAATCAAACAGGCTTAACACCAA-CAGTAAGGGAAAGACTGATGCA 1446
Query 177 TCACCCT-CTAAgaaaaccggcaacaaagaaacgcgaaaacgaaaaagaaaacAGGTAGA 235
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1447 TCA-CCTCCTAAGAAAACCGGCAACACAGAAACGCGAAAACGAAAAAGAAAACAGGTAGA 1505
Query 236 GGTTCACTCCTTATCAACTGGAAGCGAGTCAGCCGGTGACATTGAAGGTGAAGCGGATGT 295
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1506 GGTTCACTCCTTATCATCTGGAAGCGAGTCAGCCGGTGACATTGAAGGTGAAGAGGATGT 1565
Query 296 TCAGAGTACATGGAAAGAGGACGGAAATGCGCCAAGCTCGGGTACATTTGAT-AAGTGTG 354
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1566 TCAGAGTACATGGAAAGAGGACGGAAATGCGCCAAGCTCGGGTACATTTGATGAA-TGTG 1624
Query 355 ATGATTATGGAGATGCTCTAAAAATCACTCAGGAAGGTGATTTGATGCAAGAAGAAAGCG 414
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1625 ATGATTATGGAGGTGCTCTAAAAATCACTCAGGAAGGTGATGTGATGCAAGAAGAAAGTG 1684
Query 415 ACTTTGATCACTGTTCTTCAAATTGTACAAAGACGAAAGAATCAATGATGAGAGAGATAG 474
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1685 ACTTTGATCACTGTTCTTCAAATTGTACAAAGATGAAAGAATCAATGATGAGAGAGATAG 1744
Query 475 AGAATCTTGAACTGAAACTTCAATTGTATGGAGGACATGGTCTGAATAATTTAACCTACG 534
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 AGAACCTTGAACTGAAGCTTCAATTGTATGGAGGACATGGTCTGAATAATTTAACCTACG 1804
Query 535 ACGAGCTTCTTCATTTTGAGCATCAACTCGAATCTTCTCTCCATATTGCTCGAGCTCATA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1805 ACGAGCTTCTTCATTTTGAGCATCAACTCGAATCTTCTCTCCATATTGCTCGAGCTCATA 1864
Query 595 AGCAGGAGCAGCAGCAACAACAAACAGACAAGCTTAAGGAAAATCTCATGGTGTGTCAAA 654
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1865 AGCAGGAGCAGCAGCAACAACAAACAGACAAGCTTAAGGAGAATCTCATGGTGTGTCAAA 1924
Query 655 GGCAAGAAGATGATGACATCATGCACCGGCAAGTGAAGAAGGAGAACCCACCGGTGTTCT 714
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1925 GGCACGAAGATGATGACATCATGCACCGGCAAGTGAAGAAGGAGAACCCACCGGCGTTCT 1984
Query 715 TCAGCTCCTCTTGCCGCCACAACCAGCCCCAAGACTAGGACAACAACTTCTCTCTATC 772
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1985 TCAGCTCCTCCCGCCGCCACAACCAGCCCCAAGACTAGGACAACAACTTCTCCCTATC 2042
> AT1G31140.2 | Symbols: GOA | GORDITA | chr1:11117993-11119785
FORWARD LENGTH=798
Length=798
Score = 147 bits (79), Expect = 2e-34
Identities = 132/155 (85%), Gaps = 14/155 (9%)
Strand=Plus/Plus
Query 444 AAGACGAAAGAATCAATGATGAGAGAGATAGAGAATCTTGAA-CTGAAACTTCAATTGTA 502
|||||||| |||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 321 AAGACGAAGGAATCAATGATGAGAGAGATAGAGAATCTT-AAGCTGAATCTTCAATTGTA 379
Query 503 TGGA-GGACATGGTCT-GAATAAT-TTAACCTACGACGAGCTTCTT-CATTTTGAGCATC 558
| | |||||||| || |||| | || |||||||||||||| ||| | |||||||| ||
Sbjct 380 CG-ACGGACATGG-CTTGAATC-TCTTGACCTACGACGAGCTCCTTTC-TTTTGAGC-TC 434
Query 559 AA-CTCGAATCTTCTCTCCAT-ATTGCTCGAGCTC 591
| |||||||||||||| || || ||||||||||
Sbjct 435 CATCTCGAATCTTCTCTACAACAT-GCTCGAGCTC 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37524907809
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5