BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922616

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31180.1 | Symbols:  | Class II aminoacyl-tRNA and biotin sy...   244    5e-64


> AT4G31180.1 | Symbols:  | Class II aminoacyl-tRNA and biotin 
synthetases superfamily protein | chr4:15155879-15159589 FORWARD 
LENGTH=2126
Length=2126

 Score =  244 bits (132),  Expect = 5e-64
 Identities = 158/170 (93%), Gaps = 3/170 (2%)
 Strand=Plus/Plus

Query  353   TTGGAAA-CAATACCCATTTAAACCTTTGAAGTTTCT-TGAAAAGACATTGAGGTTAACG  410
             ||||||| |||||||||||| ||||||||||||||||   |||| |||||||||||||||
Sbjct  1376  TTGGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACCAAAA-ACATTGAGGTTAACG  1434

Query  411   TTTGAAGAAGGGGTTCAAATTCTTAAGGAAGCTGGTGTGGAGATTGATCCTCTTGGCGAT  470
             |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct  1435  TTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGGAGGTTGATCCTCTTGGCGAT  1494

Query  471   CTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTACTGGAAAAGTA  520
             ||||||||||||||| |||||||||| ||||| |||||| ||||||||||
Sbjct  1495  CTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTATTGGAAAAGTA  1544


 Score =  196 bits (106),  Expect = 1e-49
 Identities = 148/168 (88%), Gaps = 3/168 (2%)
 Strand=Plus/Plus

Query  177   TGCGTTC-GAGAAAATTTGCTATCCAAGGATTTTGTT-AATATCCACACACCGAAACTCT  234
             ||| ||| ||||||| || | ||  ||| ||||||||  | ||||||||||| |||||  
Sbjct  1005  TGCCTTCAGAGAAAAATTACGATTTAAGAATTTTGTTGGA-ATCCACACACCAAAACTGA  1063

Query  235   TGGCCGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACCAAGGACAGCCTG  294
             |||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct  1064  TGGCTGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACAAAGGGCAACCTG  1123

Query  295   CTTGTCTAGCTCAGTCTCCTCAGCTTCACAAGCAAATGACAATATGTG  342
             ||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct  1124  CTTGTCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATATGTG  1171



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25920819852


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5