BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922624

Length=1467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66640.2 | Symbols: DAR3 | DA1-related protein 3 | chr5:2659...   215    1e-54


> AT5G66640.2 | Symbols: DAR3 | DA1-related protein 3 | chr5:26599384-26601867 
FORWARD LENGTH=1765
Length=1765

 Score =  215 bits (116),  Expect = 1e-54
 Identities = 282/361 (78%), Gaps = 16/361 (4%)
 Strand=Plus/Plus

Query  593   AGTACAATGAGCATCCCTTCTGGTTGGAAAAATATTGTGCT-TGTCATGATTTTGATGGT  651
             ||| || ||||||||| ||||||  ||| ||||| ||| || | |||||||   ||||| 
Sbjct  762   AGTTCAGTGAGCATCCGTTCTGGAAGGAGAAATACTGTCCTAT-TCATGATGAGGATGGA  820

Query  652   ACTCCCAAGTGTTGCAGCTGTGAAAGATTAGAGCCTAAAGAAACGAACTATGTGATTATT  711
             ||| |||||||||||||||||||||||||||||||||  | |||||||||||| ||  ||
Sbjct  821   ACTGCCAAGTGTTGCAGCTGTGAAAGATTAGAGCCTAGGGGAACGAACTATGTAATGCTT  880

Query  712   GGTGATGGTC-GGTGGATATGTCTAGAATGTAATGAG-TCTTCAATTAGGGATACTTATG  769
             ||||||  || ||||| ||||| |||| |||| || | ||  |  ||| ||||||| | |
Sbjct  881   GGTGATT-TCCGGTGGCTATGTATAGAGTGTA-TGGGATCAGCGGTTATGGATACTAACG  938

Query  770   AA-TGCCAACCTCTGCATTTTGAAATCCGTGAATTCTTTAAAGGCTTAAACATGGAGATT  828
             || | ||| ||| |||| ||||||||||||||||||||  |||||||   | || || ||
Sbjct  939   AAGT-CCAGCCTTTGCACTTTGAAATCCGTGAATTCTTCGAAGGCTTGTTCTTGAAGGTT  997

Query  829   GAGAAACAGTTTCCTCTTG-TT-TTGGTTGAGAAACAAGCGCTGAATACAGCTGAGGAGG  886
             || ||| | ||| |||| | || ||| | |||||||||||||| |||| ||||||||| |
Sbjct  998   GACAAAGAATTTGCTCT-GCTTCTTG-TCGAGAAACAAGCGCTTAATAAAGCTGAGGAAG  1055

Query  887   AAGATAAGATTGGCCATCATCACG-AGGTGTCAACCAGGGGT-TGTTGCTTTTCCGAAGA  944
             |||| ||||| | | | ||||  | ||  || |||||| ||| | |||| | || |||||
Sbjct  1056  AAGAGAAGATCGACTACCATCGTGCAGCCGT-AACCAGAGGTCT-TTGCATGTCTGAAGA  1113

Query  945   G  945
             |
Sbjct  1114  G  1114



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 72338985345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5