BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922628
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31490.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2146 0.0
AT1G31485.1 | Symbols: | other RNA | chr1:11271744-11273075 FO... 1408 0.0
> AT1G31490.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr1:11271228-11273294 REVERSE LENGTH=2067
Length=2067
Score = 2146 bits (1162), Expect = 0.0
Identities = 1304/1374 (95%), Gaps = 4/1374 (0%)
Strand=Plus/Plus
Query 1 TACCTACTGGTAAACTGAAAATGAAAATCTTTGATGTGAGTTTCACCGGAGAGTTCATAG 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 197 TACCTACTGGTAAACTGAAAATGAAAATCTTTGATGTTAGTTTCACCGGAGAGTTCATAG 256
Query 61 TCAAAGCTTCCGGCGACCAACTGGAGAAAGTTAGTAGCCTTACTCTCTCAAATCTTGACC 120
|||||||||| |||||||||| ||||||||||| |||||||| |||||||||| ||||||
Sbjct 257 TCAAAGCTTCTGGCGACCAACCGGAGAAAGTTAATAGCCTTAATCTCTCAAATTTTGACC 316
Query 121 TTCTTTCCGGCCGTTTTCCGGTGACCTACTTTTACTTCTACCCTAAGCAACCACAATTAT 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 317 TTCTTTCCGGCCGTTTTCCGGTGACCTACTTTTACTTCTACCCCAAGCAACCACAATTAT 376
Query 181 CCTTTGAGTCAATCGTCAAATCCTTCAAAAGCTCTCTATCTGAAACTCTTACCTACTTCT 240
||||||| |||||||||||||| || |||||||||| ||| ||||||| | ||||||||
Sbjct 377 CCTTTGAAACAATCGTCAAATCCCTCCAAAGCTCTCTCTCTCAAACTCTCAGCTACTTCT 436
Query 241 ATCCTTTCGCGGGTCAGATTGTTACCAACGAAACCTCTCAAGAGGAGCCTATGATCATCT 300
||||||||||||||||||||||| |||| ||||| || ||||| ||||||||||||||||
Sbjct 437 ATCCTTTCGCGGGTCAGATTGTTCCCAATGAAACATCACAAGAAGAGCCTATGATCATCT 496
Query 301 GTAACAACAATGGAGCTTTGCTCGTTGAAGCACGAGCTCATATCGATTTCAAGAGTTTGG 360
|||||||||||||||||||| |||||||||| ||||||||| ||||| |||||||||| |
Sbjct 497 GTAACAACAATGGAGCTTTGTTCGTTGAAGCCCGAGCTCATGTCGATCTCAAGAGTTTAG 556
Query 361 ATTTTTACAATCTCGATGTGTTTCTCCAATCAAAGCTGGTTCCA-GTTAACCCGGATTTC 419
||||||||||||| |||| |||||||||||||||||||| | || |||||||||||||||
Sbjct 557 ATTTTTACAATCTTGATGCGTTTCTCCAATCAAAGCTGG-TACAGGTTAACCCGGATTTC 615
Query 420 GCTTTACAGATTCAAGTGACAGAGTTCGAATGCGGAGGCCTCGCTATAACATTCACGTTT 479
||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 616 TCTTTACAGATTCAAGCGACAGAGTTCGAATGTGGAGGCCTCGCTTTAACATTCACGTTT 675
Query 480 GATCATGCTTTAGGAGACGCGAGCTCCTTCGGGAAATTCCTCACTTTGTGGTCAGAGATA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GATCATGCTTTAGGAGACGCGAGCTCCTTCGGGAAATTCCTCACTTTGTGGTCAGAGATA 735
Query 540 TCGAGAAATCAGCAGGTTTCTTGTGTACCAGATCACCA-GAGAAATCTCCTCCGGGCACG 598
||||||||| ||| ||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 736 TCGAGAAATAAGCCGGTTTCTTGTGTACCAGATCA-CAGGAGAAACCTCCTCCGGGCACG 794
Query 599 GTCTCCTCCACGTTACCACCCTCACTTGGACAAAAAATTCGTAAAATGCAGCAAGGAAGA 658
|||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||
Sbjct 795 CTCTCCTCCACGTTATGACCCTCACTTGGACAAAACTTTCATAAAATGCAGTGAGGAAGA 854
Query 659 CATTAAGAACATACCGATGTCTAAAACGCTCATCAAGCGTCTCTACCACATCGATGCTTC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 855 CATTAAGAACATACCGATGTCTAAAACGCTCATCAAGCGTCTCTACCACATCGGTGCTTC 914
Query 719 GAGCATAGCCGCGTTGCAAGATCTAGCTACTGTAAACGGAGAGAGCAGGACAAAGATTGA 778
|||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 915 GAGCCTAGACGCGTTGCAAGCTCTAGCTACTGTAAACGGAGAGAGCAGGACAAAGATTGA 974
Query 779 AGCTTTCTCCGCTTATGTGTGGAAGAAAATGGTGGATTCTATAGAGAGCGGTCATAAAAC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 AGCTTTCTCCGCTTATGTGTGGAAGAAAATGGTGGATTCTATAGAGAGCGGTCATAAAAC 1034
Query 839 CTGCAAGATGGGATGGCTTGTCGACGGTAGAGGAAGACTCGAGACCGTTACCTCGAGCTA 898
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1035 CTGCAAGATGGGATGGCTTGTCGACGGTAGAGGAAGACTTGAGACCGTTACCTCGAGCTA 1094
Query 899 CATAGGAAACGTCTTGTCTGTAGCTGTAGGTGAAGCCAGTATCGAGAATCTGAAGCAAAA 958
|||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1095 CATAGGAAACGTATTGTCTATAGCTGTAGGTGAAGCCAGTATCGAAAATCTGAAGAAAAA 1154
Query 959 CCATGTATCAGAGATAGCAAACATAGTGCATAAATCGATAACAGAAGTGACAAACAATAC 1018
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1155 CCATGTGTCAGATATAGCAAACATAGTGCATAAATCGATAACAGAAGTGACAAACGATAC 1214
Query 1019 TCATTTCACAGATTTGATAGATTGGATCGAGAGTCACCGACCTGGACTGATGTTGGCTCG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 TCATTTCACAGATTTGATAGATTGGATCGAGAGTCACCGACCTGGACTGATGTTGGCTCG 1274
Query 1079 GGTGGTCCTCGGACAAGAAGGACCAGCTTTGGTCTTGTCTTCAGGACGACGGTTCCCTGT 1138
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GGTGGTTCTCGGACAAGAAGGACCAGCTTTGGTCTTGTCTTCAGGACGACGGTTCCCTGT 1334
Query 1139 GGCTGAATTGGATTTTGGGTTTGGTGCTCCTTTCCTAGGAACTGTATGTTCAACCATTGA 1198
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1335 GGCTGAATTGGATTTTGGATTTGGTGCTCCTTTCCTAGGAACTGTATGTTCAACGGTTGA 1394
Query 1199 GAAAATAGGAGTTGGTTACCTGAACCAGCGACCTAGCGCCTGCAATGATGGCTCGTGGTC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 GAAAATAGGAGTTGGTTACCTGAACCAGCGACCTAGCGCCTGCAATGATGGCTCGTGGTC 1454
Query 1259 GGTTTCTGCTATTGTGTGGCCTGAACTCACTGCAGCTTTAGAGTCTGACTCGGTTTTTCA 1318
|||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||
Sbjct 1455 GGTTTCTGCTATTGTGTGGCCTGAACTCGCTACAGCTTTAGAGTCTGACTCGGTGTTTCA 1514
Query 1319 GCCAATGTCTGCTAAACATCTTCAACTCCAGACCTGaaaaaaaGGTCAGCTAAC 1372
|||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1515 GCCAATGTCTGCTAAACATCTTCAACTCCAGACCTGAAAACAAGCAAAGCTAAC 1568
> AT1G31485.1 | Symbols: | other RNA | chr1:11271744-11273075
FORWARD LENGTH=1220
Length=1220
Score = 1408 bits (762), Expect = 0.0
Identities = 874/929 (94%), Gaps = 4/929 (0%)
Strand=Plus/Minus
Query 24 AAAATCTTTGATGTGAGTTTCACCGGAGAGTTCATAGTCAAAGCTTCCGGCGACCAACTG 83
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1220 AAAATCTTTGATGTTAGTTTCACCGGAGAGTTCATAGTCAAAGCTTCTGGCGACCAACCG 1161
Query 84 GAGAAAGTTAGTAGCCTTACTCTCTCAAATCTTGACCTTCTTTCCGGCCGTTTTCCGGTG 143
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1160 GAGAAAGTTAATAGCCTTAATCTCTCAAATTTTGACCTTCTTTCCGGCCGTTTTCCGGTG 1101
Query 144 ACCTACTTTTACTTCTACCCTAAGCAACCACAATTATCCTTTGAGTCAATCGTCAAATCC 203
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1100 ACCTACTTTTACTTCTACCCCAAGCAACCACAATTATCCTTTGAAACAATCGTCAAATCC 1041
Query 204 TTCAAAAGCTCTCTATCTGAAACTCTTACCTACTTCTATCCTTTCGCGGGTCAGATTGTT 263
|| |||||||||| ||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct 1040 CTCCAAAGCTCTCTCTCTCAAACTCTCAGCTACTTCTATCCTTTCGCGGGTCAGATTGTT 981
Query 264 ACCAACGAAACCTCTCAAGAGGAGCCTATGATCATCTGTAACAACAATGGAGCTTTGCTC 323
|||| ||||| || ||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 980 CCCAATGAAACATCACAAGAAGAGCCTATGATCATCTGTAACAACAATGGAGCTTTGTTC 921
Query 324 GTTGAAGCACGAGCTCATATCGATTTCAAGAGTTTGGATTTTTACAATCTCGATGTGTTT 383
|||||||| ||||||||| ||||| |||||||||| |||||||||||||| |||| ||||
Sbjct 920 GTTGAAGCCCGAGCTCATGTCGATCTCAAGAGTTTAGATTTTTACAATCTTGATGCGTTT 861
Query 384 CTCCAATCAAAGCTGGTTCCA-GTTAACCCGGATTTCGCTTTACAGATTCAAGTGACAGA 442
|||||||||||||||| | || ||||||||||||||| ||||||||||||||| ||||||
Sbjct 860 CTCCAATCAAAGCTGG-TACAGGTTAACCCGGATTTCTCTTTACAGATTCAAGCGACAGA 802
Query 443 GTTCGAATGCGGAGGCCTCGCTATAACATTCACGTTTGATCATGCTTTAGGAGACGCGAG 502
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 801 GTTCGAATGTGGAGGCCTCGCTTTAACATTCACGTTTGATCATGCTTTAGGAGACGCGAG 742
Query 503 CTCCTTCGGGAAATTCCTCACTTTGTGGTCAGAGATATCGAGAAATCAGCAGGTTTCTTG 562
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 741 CTCCTTCGGGAAATTCCTCACTTTGTGGTCAGAGATATCGAGAAATAAGCCGGTTTCTTG 682
Query 563 TGTACCAGATCACCA-GAGAAATCTCCTCCGGGCACGGTCTCCTCCACGTTACCACCCTC 621
|||||||||||| || |||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 681 TGTACCAGATCA-CAGGAGAAACCTCCTCCGGGCACGCTCTCCTCCACGTTATGACCCTC 623
Query 622 ACTTGGACAAAAAATTCGTAAAATGCAGCAAGGAAGACATTAAGAACATACCGATGTCTA 681
|||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 622 ACTTGGACAAAACTTTCATAAAATGCAGTGAGGAAGACATTAAGAACATACCGATGTCTA 563
Query 682 AAACGCTCATCAAGCGTCTCTACCACATCGATGCTTCGAGCATAGCCGCGTTGCAAGATC 741
|||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| ||
Sbjct 562 AAACGCTCATCAAGCGTCTCTACCACATCGGTGCTTCGAGCCTAGACGCGTTGCAAGCTC 503
Query 742 TAGCTACTGTAAACGGAGAGAGCAGGACAAAGATTGAAGCTTTCTCCGCTTATGTGTGGA 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TAGCTACTGTAAACGGAGAGAGCAGGACAAAGATTGAAGCTTTCTCCGCTTATGTGTGGA 443
Query 802 AGAAAATGGTGGATTCTATAGAGAGCGGTCATAAAACCTGCAAGATGGGATGGCTTGTCG 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 AGAAAATGGTGGATTCTATAGAGAGCGGTCATAAAACCTGCAAGATGGGATGGCTTGTCG 383
Query 862 ACGGTAGAGGAAGACTCGAGACCGTTACCTCGAGCTACATAGGAAACGTCTTGTCTGTAG 921
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 382 ACGGTAGAGGAAGACTTGAGACCGTTACCTCGAGCTACATAGGAAACGTATTGTCTATAG 323
Query 922 CTGTAGGTGAAGCCAGTATCGAGAATCTG 950
|||||||||||||||||||||| ||||||
Sbjct 322 CTGTAGGTGAAGCCAGTATCGAAAATCTG 294
Score = 508 bits (275), Expect = 4e-143
Identities = 289/296 (98%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 1060 CTGGACTGATGTTGGCTCGGGTGGTCCTCGGACAAGAAGGACCAGCTTTGGTCTTGTCTT 1119
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 296 CTGGACTGATGTTGGCTCGGGTGGTTCTCGGACAAGAAGGACCAGCTTTGGTCTTGTCTT 237
Query 1120 CAGGACGACGGTTCCCTGTGGCTGAATTGGATTTTGGGTTTGGTGCTCCTTTCCTAGGAA 1179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 236 CAGGACGACGGTTCCCTGTGGCTGAATTGGATTTTGGATTTGGTGCTCCTTTCCTAGGAA 177
Query 1180 CTGTATGTTCAACCATTGAGAAAATAGGAGTTGGTTACCTGAACCAGCGACCTAGCGCCT 1239
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CTGTATGTTCAACGGTTGAGAAAATAGGAGTTGGTTACCTGAACCAGCGACCTAGCGCCT 117
Query 1240 GCAATGATGGCTCGTGGTCGGTTTCTGCTATTGTGTGGCCTGAACTCACTGCAGCTTTAG 1299
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 116 GCAATGATGGCTCGTGGTCGGTTTCTGCTATTGTGTGGCCTGAACTCGCTACAGCTTTAG 57
Query 1300 AGTCTGACTCGGTTTTTCAGCCAATGTCTGCTAAACATCTTCAACTCCAGACCTGa 1355
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 AGTCTGACTCGGTGTTTCAGCCAATGTCTGCTAAACATCTTCAACTCCAGACCTGA 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67720535205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5