BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922631
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31460.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1192 0.0
> AT1G31460.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G23270.1);
Has 1251 Blast hits to 756 proteins in 185 species: Archae
- 0; Bacteria - 295; Metazoa - 374; Fungi - 176; Plants
- 58; Viruses - 17; Other Eukaryotes - 331 (source: NCBI BLink).
| chr1:11261541-11263364 REVERSE LENGTH=1824
Length=1824
Score = 1192 bits (645), Expect = 0.0
Identities = 857/955 (90%), Gaps = 32/955 (3%)
Strand=Plus/Plus
Query 1 GAAGCTTGATATCATCGACAATGGCGGATTTTGGGTATTTTTCGGATACAGACGATTCAG 60
|||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 735 GAAGCTTGATCTCATCGATAATGGCGGATTTTGGGTATTTTTCAGATACAGACGATTCAG 794
Query 61 CAGTGGAAGAGCTAATTTCGCAAGCGAAGGAGCTTTCTGCTTTGGAGCAAGTAGCTGCTA 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 795 CAGTGGAAGAGCTAATTTCGCAAGCGAAGGAGCTTTCTGATTTGGAGCAAGTAGCTGCTA 854
Query 121 TCAATTGTTCTGGTTTCACCGATTCTACTCTTCCCGATGATCTCGAATCTCGTTTCCGTC 180
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 855 TCAATTGTTCTGGATTCACCGATTCTACTCTTCCAGATGATCTCGAATCTCGCTTCCGTC 914
Query 181 GACTCAAATCTCTTCCAGCTTCTCCACGACACGAACCGGTTTCTTCGTCTTCTTCGATGA 240
| |||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 915 GCCTCAAATCTCTTCCAGCTGCTCCACGACACGAACCGGTATCTTCATCTTCTTCGATGA 974
Query 241 ATAGGAAGAATCATCTCACACACTCCAAGAGCGTGGCGACGAATCATCCGAA-GGAGGAT 299
||||| |||| | |||| |||| ||||| ||||| |||| | ||| |
Sbjct 975 ATAGGCAGAAGCCTCTCTCACATTCCAAAAGCGT------GAAT-GT--GAATTTCTCA- 1024
Query 300 GTGAAATTCTCAGGAAATCCAGGTAAAAAACCTGGTTCTGTGAGTTTATCTGAT---GA- 355
| |||| || | ||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct 1025 G-GAAA-TC-GAAGAAATCCAGGTAAAAAAACTGGCTCTGTGAGTTTATCTGATGAAGAT 1081
Query 356 ---AG--A--T-TCGAGAAACAAACGAGATCTGGAAATGAAATCGAGTTCTCAGGCTGAG 407
|| | | |||||||| ||||| |||||||| |||||||||||||||| ||||||
Sbjct 1082 TCGAGTAATCTCTCGAGAAAAAAACGTGATCTGGATTTGAAATCGAGTTCTCAAGCTGAG 1141
Query 408 CTTGTCTCTAACGGAAGTGGAGATTTCTCAGATTCTGGGAACATAAGTGAGAGTAAAATT 467
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1142 CTTGTCTCTAATGGAAGTGGAGATTTCTCAGATTCTGGAAACATCAGTGAGAGTAAAATT 1201
Query 468 TTCTCGCCAGTGAAACAACAAACGAAGAAGAAGCTTCCTAAAGAGAAACGCAGAATCGTT 527
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1202 CTCTCGCCAGTGAAACAACAAACGAAGAAGAAGCTTCCTAAAGAGAAACGAAGAATCGTA 1261
Query 528 TCACCATCATCCTCATCTTCGATCGATTTAGCTACTACACCACCATCAACAGATTCAGAA 587
|||||||| || ||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 1262 TCACCATCTTCATCATCGTCAATCGATTTAG---CTACACCACCATCAACAGATTCAGAA 1318
Query 588 CCAGAAAAGAAATCGAAATCAAAATCAAAGTCGTCATGGTTCGATAAGTTATCTCCATCG 647
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 1319 CCAGAAAAGAAATCGAAACCGAAATCAAAGTCGTCATGGTTCGATAAGTTATCTCCGTCG 1378
Query 648 AAACTCATTGGAACCATTTGGCGTTCTTCGCCGAGAAAATCAACCACCAACAAGAAGAAT 707
|||||||| ||| |||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 1379 AAACTCATCGGATCCATTTGGCGTTCTTCACCGAAAAAATCAACAACCAACAAGAAGAAT 1438
Query 708 CTCAAAAGCAT-CAAATCGTTTAATACTGCTGCTTACACTTCTGGTCGAGAGAGGAAGGT 766
||||||| | | ||||| ||| | ||||| ||||| ||||||||||||||||||| ||
Sbjct 1439 CTCAAAAAC-TGTAAATCATTTGGTGCTGCTACTTACTCTTCTGGTCGAGAGAGGAACGT 1497
Query 767 CGATTTCGACGAGTTTTTATCTGATTTGAATGCGTTTCCAGTGGAAGATCAAAGGAAAAT 826
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TGATTTCGATGAGTTTTTATCTGATTTGAATGCGTTTCCAGTGGAAGATCAAAGGAAAAT 1557
Query 827 GTTGAAGAAAGCGCTTAAGGAACAGCAGAAGATGAGGAAAGAAGCAGCTGAGATTATCAA 886
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1558 GTTGAAGAAAGCGCTTAAGGAACAACAGAAGATGAGGAAAGAAGCAGCTGAGATCATTAA 1617
Query 887 AATGGCGAAACAGGCATCAGCTAGATTCGATTTTGATGATTGAGA-ATTGGGGAA 940
|||||||||||| |||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1618 AATGGCGAAACATGCATCAGCTAGATTCGATTTTGATGATTGAGAGATTTGGGAA 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46466585975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5