BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922633
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31440.1 | Symbols: | SH3 domain-containing protein | chr1:... 2172 0.0
> AT1G31440.1 | Symbols: | SH3 domain-containing protein | chr1:11255836-11258715
REVERSE LENGTH=1870
Length=1870
Score = 2172 bits (1176), Expect = 0.0
Identities = 1287/1342 (96%), Gaps = 1/1342 (0%)
Strand=Plus/Plus
Query 21 CATGGAAGCTATTAGAAAGCAAGCGGCTAAGCTCAGAGAGCAAGTCGCGAGGCAACAGCA 80
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 236 CATGGAAGCTATAAGAAAGCAAGCTGCGAAGCTCAGAGAGCAAGTCGCGAGGCAACAGCA 295
Query 81 AGCGGTTTTGAAGCATTTAGGGCATGTTAATGCTGATGCTGTTGTTGTTGATGAAGAAGA 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AGCGGTTTTGAAGCATTTAGGGCATGTTAATGCTGATGCTGTTGTTGTTGATGAAGAAGA 355
Query 141 GCTTCACTGTCATCAGAAACTTCAAGATCTTTATAGCTCTACTAAGGCTGCTAAGCGTTT 200
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 356 GCTTCATTGTCATCAGAAACTTCAAGATCTTTATAGCTCTACTAAAGCTGCTAAGCGTTT 415
Query 201 GCAAAGGAATATTGTTCGTGGACTCGAAGGTTTCATTGCGACAGGCACGAAGGTTGTAGA 260
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 416 GCAAAGGAACATTGTTCGTGGACTCGAAGGTTTCATTGCGACTGGCACAAAGGTTGTTGA 475
Query 261 GATAGGGTTGAAGTTTGCTGAAGATTTTAAGAAATATGGAGATGAGAATCCTGATGCTAA 320
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 476 GATAGGGTTGAAGTTTGCTGAAGATTTCAAGAAATATGGAGATGAGAATCCTGATGCTAA 535
Query 321 TACTCCTCTCTCAAGAGTTGCTCATCACTTTGGGACCTCTTACAAGTCGGTGGAAGGCGA 380
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 536 TACTCCTCTATCAAGAGTCGCACATCACTTTGGGACCTCTTACAAGTCGGTGGAAGGCGA 595
Query 381 GAGGGAAACTCTCCTCGGAGTTCTTAGTGAGCAGGTTTGTGAACCAATTCGTACGATGAT 440
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 596 GAGGGAAACTCTCCTCGGAGTTCTTAGTGAGCAGGTTTGTGAGCCAATTCGTACAATGAT 655
Query 441 ATATAGTGCGCCTTTGGAGGATGCTCGGCATTTAGTGAATCTCTATGACAGGCTGAGACA 500
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 656 ATATAGTGCGCCTTTGGAGGATGCTCGGCATTTGGTGAATCACTATGACAGGCTGAGACA 715
Query 501 AGAAGTCGAAGCTCAGGCAACTGATGTACTGAGGAGAAGATCAAAGTTGAAGGAATCTGA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AGAAGTCGAAGCTCAGGCAACTGATGTACTGAGGAGAAGATCAAAGTTGAAGGAATCTGA 775
Query 561 TATTTCTGAAGAAGCATACATCAAACTTAAGAATTCCGAATCGAGATTAGCTGAGCTCAA 620
||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 776 TATTTCTGAAGAAGCCTACATAAAACTTAAGAATTCTGAATCGAGATTGGCTGAGCTCAA 835
Query 621 ATCAAGTATGAAAACTCTTGGCAAAGAAGCTACTAAGGCCATGTTGGAAGTCAACGATCA 680
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 836 ATCAAGTATGAAAACTCTTGGTAAAGAAGCTACTAAGGCCATGTTGGAAGTCGACGATCA 895
Query 681 GCAGCAGAACGTAACTTCTCAGCGCCTCCGTGCTCTGGTTGAAGCTGAAAGATCATATCA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GCAGCAGAACGTAACTTCTCAGCGCCTCCGTGCTCTGGTTGAAGCTGAAAGATCATATCA 955
Query 741 TCGTAATGCTCTTGATATCCTCGACAAGCTACATTCCGAGATGATTGCTGAGGAAGAAGC 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TCGTAATGCTCTTGATATCCTCGACAAGCTACATTCCGAGATGATTGCTGAGGAAGAAGC 1015
Query 801 TATAGGATCATCACCAAAGTCACCAACTTTACATATAGAGGATAGTGTTTCTCTTCCCCA 860
||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 1016 TATAGGATCATCACCAAAGTCACTACCTTTACATATAGAGGATAGTGCTTCTCTTCCCCA 1075
Query 861 AGAAGAACCGAATTCAAATCCCTCGGGAGAGATCAAATCAAATCCCTCGGGAAAGATCAA 920
| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||
Sbjct 1076 ACAAGAACCGAATTCAAATTCCTCAGGAGAGATCAAATCAAATCCCTTGGGAAAGATCAA 1135
Query 921 ATCAAGTCGTCGAGAAGAAATCAAGTCTAATCCCCAAGAAGTAACCAAACCCAATCCCAA 980
| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1136 AGCAAGTCGTCGAGAAGAAATCAAGTCTAATCCCCAAGAAGTAACCAAACCTAGTCCCAA 1195
Query 981 AGACGAAATGAAGTCCAGTCCCCAAGAAGAAACCAAATCCAATCACCATAAAGAAATCAA 1040
|||||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||
Sbjct 1196 GGACGAAATGAAGTCCAGTCCACAAGAAGAAACCAAATCCAATCATCAGAAAGAAATTAA 1255
Query 1041 GTCTAGTCCACAGGAAGAGATCAAGAAGTCCAATGGATCTGATGATCATCACAACCATCA 1100
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1256 GTCTAGTCCACAGGAAGAGATCAAGAAGTCCAATGGGTCTGATGATCATCACAATCATCA 1315
Query 1101 ACTTCTCAGTCAAAATGATTCCTACTTTCTTGCAAAGGTTGTGCACCCGTTTGATGCTCA 1160
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 ACTTCTCAGCCAGAATGATTCCTACTTTCTTGCAAAGGTTGTGCACCCGTTTGATGCTCA 1375
Query 1161 AGCCCCAGGGGAACTCAGTCTAGCTGTCGATGATTATGTAATTGTGCGACAGGTGGCTGG 1220
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AGCCCCAGGGGAACTCAGTCTCGCTGTCGATGATTATGTAATTGTGCGACAGGTGGCTGG 1435
Query 1221 GACAGGCTGGTCAGAAGGAGAATACAAGGGCAAAGCCGGATGGTTTCCGTCGGCTTACGT 1280
|||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 1436 TACAGGCTGGTCAGAAGGAGAATACAAAGGCAAAGCTGGATGGTTTCCGTCTGCGTACGT 1495
Query 1281 TGAGAAACAAGAGAAAGCTCCGGCCAGCAAGATTGTGGAATCAAACCCCAAGCAACAATG 1340
||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| ||
Sbjct 1496 AGAGAAACAAGAGAAAGCTCCGGCAAGCAAGATCGTGGAATCAAACTCCAAGCAACAGTG 1555
Query 1341 AT-CCCTTTCTTTAACAAATAC 1361
|| |||||||||||||| ||||
Sbjct 1556 ATGCCCTTTCTTTAACATATAC 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67017727575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5