BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922640
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31350.1 | Symbols: KUF1 | KAR-UP F-box 1 | chr1:11221335-11... 1799 0.0
> AT1G31350.1 | Symbols: KUF1 | KAR-UP F-box 1 | chr1:11221335-11222786
REVERSE LENGTH=1452
Length=1452
Score = 1799 bits (974), Expect = 0.0
Identities = 1120/1192 (94%), Gaps = 4/1192 (0%)
Strand=Plus/Plus
Query 1 AACTGTAACGGCCTGAATCAATGTCTACCGCCGCCGCGGAATCACCACCGGCGAAGCGAA 60
||||| |||||| |||||||||||| ||| ||||||| |||||||| |||||||| ||||
Sbjct 91 AACTGAAACGGCGTGAATCAATGTCAACCACCGCCGCAGAATCACCGCCGGCGAAACGAA 150
Query 61 GAAGAATAGTCACCGGAAATGAAAACTCGGCTTTAATCGAAGGACTTCCCGATCATATAT 120
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 151 GAAGAACAGTCACCGGAAATGAAAACTCCGCTTTAATCGAAGGACTTCCCGATCACATCT 210
Query 121 CAGAGATCTGTCTTTC-CAAAGTTAACCGTCCGTCGTTACTCTCCGCCGTATGTACACGG 179
||||||||||||| || | ||| ||||||||||||||||||||||||| |||||||||
Sbjct 211 CAGAGATCTGTCTGTCTC-TCGTTCACCGTCCGTCGTTACTCTCCGCCGTGTGTACACGG 269
Query 180 TGGCGCCGTCTTCTTTACTCGCCGGAATTTCCTTCGTTTCCGTCTCTCTACGCGCTTCTC 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 270 TGGCGCCGTCTTCTTTACTCGCCGGAATTTCCTTCGTTTCCGTCACTCTACGCTCTTTTC 329
Query 240 GTTGACTCAACCTCGGATCCGGGTCTGGTCAACCCGTCAGTCCGGTTTATGTGTTTCAAC 299
|| || ||||| |||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 330 GTCGATTCAACATCGGATACGGGTCGGGTCAACCCGTCAGTCCGGTTTATGTGTTTCAAC 389
Query 300 CCGGTTTATTCAAAATGGGATCCGCTTCCTCCTCCTCCACCTGACCCGCCTCTTCACCGG 359
||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 390 CCGGTTTCTTCAAAATGGTATCCGCTTCCTCCTCCACCACCTGACCCGCCTCTTCACCGG 449
Query 360 ATTCTCTACCGTCATCCGTCGTTTATCTCCTTTAATTTACCGATTCAATGCGTCTCCGCC 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 ATTCTTTACCGTCATCCGTCGTTTATCTCCTTTAATTTACCGATTCAATGCGTCTCCGCC 509
Query 420 GCCGGGAAACTCATCCTCATCGCCGGAAGTAACCAACAACTCTCTCCGGCTATCTCTCAC 479
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 510 GCCGGAAAACTCATTCTCATCGCCGGAAGTAACCAACAACTCTCTCCGGCGATCTCTCAC 569
Query 480 CCGTTAATTTTCGATCCAATTTCATCATCCTGGAGCTCCGGTCCTCAAATCGGATCTCCA 539
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 570 CCGTTAATTTTCGATCCAATTTCGTCATCCTGGAGCTCCGGTCCTCGAATCGGATCTCCA 629
Query 540 AGACGGTGGTGCGCTACCGGAGCTTGCGACGGAGCTATCTACATCGCAAGCGGAATTAGT 599
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 AGACGGTGGTGCGCCACCGGAGCTTGCGACGGAGCTATCTACATCGCAAGCGGAATTAGT 689
Query 600 TCTCAGTTCTCCTCAACCGTTGCGAAATCAATCGAGAAATTAGATCTAACCGATCAAAAC 659
||||||||||| |||||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct 690 TCTCAGTTCTCATCAACCGTCGCGAAATCTGTCGAGAAATTAGATCTAACCGAACAAAAC 749
Query 660 CGCAATAACCGGCGGTTTAATTGGGAGAAATTAAGAGATATGAGAGATTTACGGTTTAGT 719
|| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 750 CGGAATAACCACCGGTTTAATTGGGAGAAATTGAGAGATATGAGAGATTTACGGTTTAGT 809
Query 720 CGAGAAGCTATAGATGCCGTTGGATATAGAAGAAAGCTTTTAATGGTAAATGTAAAAGGA 779
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 810 CGAGAAGCTATAGACGCTGTTGGATATAGAAGAAAGCTTTTAATGGTAAATGTTAAAGGA 869
Query 780 GACGCTATTAAAGAAGGAGCTATATACGACGTCGTTAAAGATGATTGGGAAGCTATGCCG 839
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 870 GACGCGGTTAAAGAAGGAGCTATATACGACGTCGTTAAAGATGATTGGGAACCTATGCCG 929
Query 840 GAGGAGATGTTGGTTGGATGGAGAGGTCCGGTGGCGGCGATGGAGGAGGAGATTCTTTAT 899
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 930 GAGGAGATGTTGGTTGGATGGAGAGGCCCGGTTGCGGCGATGGAGGAGGAGATTCTTTAT 989
Query 900 TCGGTggatgagaggagagggacagtgagaaagtacgatgatgagaagagagagtggaga 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 TCGGTGGATGAGAGGAGAGGGACAGTGAGAAAGTACGATGATGAGAAGAGAGAGTGGAGA 1049
Query 960 gaagtGGCGGTGGTTGATGGTGGAGAAGAGTTACTTAAAGGAGCTACGCAGGTTACGGCG 1019
||||||| |||||||| |||||||||||| | ||||||||||||||||| || ||||||
Sbjct 1050 GAAGTGGTTGTGGTTGAAGGTGGAGAAGAGATGCTTAAAGGAGCTACGCAAGTAACGGCG 1109
Query 1020 GATTCAGGGAAACTTTGTGTTGTTAC-GGTTGATGGGAAGATTGTTGTGGTGGATGTTGT 1078
||||| || ||||||||||||||||| ||| |||||||| |||||||||||||||||||
Sbjct 1110 GATTCCGGTAAACTTTGTGTTGTTACTGGT-GATGGGAAAATTGTTGTGGTGGATGTTGC 1168
Query 1079 GGCGGAGCCGGCGAAGATTTGGAATGTTGAGCTTCCTGATGGGCTTGAACCGGTTTCGGT 1138
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1169 GGCGGAGCCGGCGAAGATTTGGAATGTTGAGATTCCTGATGGACTTGAACCGGTTTCGGT 1228
Query 1139 TCATGTATTACCAAGAATGAGTCAACCGGAGTTTTGCTGACGtttttttttt 1190
|||||| ||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct 1229 TCATGTTTTACCAAGAATGAGTCAACCGAATTTTTGCTGACGTATTTTTTTT 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58835038740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5