BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922661
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35160.2 | Symbols: GF14 PHI | GF14 protein phi chain | chr1... 1291 0.0
AT4G09000.2 | Symbols: GRF1, GF14 CHI | general regulatory fact... 863 0.0
AT1G78300.1 | Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA | general ... 632 1e-180
AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor 3... 388 3e-107
> AT1G35160.2 | Symbols: GF14 PHI | GF14 protein phi chain | chr1:12867126-12868890
FORWARD LENGTH=1402
Length=1402
Score = 1291 bits (699), Expect = 0.0
Identities = 737/756 (97%), Gaps = 0/756 (0%)
Strand=Plus/Plus
Query 1 TCCTTCAATCTCCGATCTCTAATGGCGGCACCACCAGCATCATCCTCGGCGAGGGAAGAG 60
||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCCATCCATCACCGATCTCTAATGGCGGCACCACCAGCATCATCCTCGGCGAGGGAAGAG 177
Query 61 TTCGTTTACCTCGCAAAACTCGCTGAACAAGCGGAACGTTACGAAGAAATGGTTGAATTC 120
||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 178 TTCGTGTACCTCGCAAAGCTCGCAGAGCAAGCGGAACGTTACGAAGAAATGGTTGAATTC 237
Query 121 ATGGAAAAAGTCGCTGAAGCCGTCGACAAAGACGAACTCACCGTCGAAGAACGTAATCTC 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 238 ATGGAAAAAGTCGCTGAAGCCGTTGACAAAGACGAACTCACCGTCGAAGAACGTAATCTC 297
Query 181 CTCTCCGTCGCTTACAAAAACGTCATCGGCGCTCGTCGTGCTTCCTGGAGAATCATCTCT 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 CTCTCCGTCGCTTACAAAAACGTAATCGGCGCTCGTCGTGCTTCCTGGAGAATCATCTCT 357
Query 241 TCCATTGAACAAAAGGAAGAGAGTCGTGGTAACGATGACCATGTAACCACGATCCGTGAT 300
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 TCCATTGAACAAAAAGAAGAGAGTCGTGGTAACGATGACCATGTGACCACGATCCGTGAT 417
Query 301 TACAGAAGCAAGATCGAATCTGAGTTATCGAAAATCTGTGACGGTATTCTTAAGCTTCTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TACAGAAGCAAGATCGAATCTGAGTTATCGAAAATCTGTGACGGTATTCTTAAGCTTCTT 477
Query 361 GATACTAGACTTGTTCCAGCTTCTGCTAATGGAGATTCGAAGGTTTTTTACCTTAAGATG 420
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 478 GATACTAGACTTGTTCCTGCTTCTGCTAATGGAGATTCTAAGGTTTTTTACCTTAAGATG 537
Query 421 AAGGGAGATTATCATAGGTATTTGGCTGAGTTTAAGACTGGTCAAGAGAGGAAAGATGCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAGGGAGATTATCATAGGTATTTGGCTGAGTTTAAGACTGGTCAAGAGAGGAAAGATGCT 597
Query 481 GCTGAACATACTCTCACCGCTTACAAAGCCGCTCAGGATATTGCTAATTCTGAATTGGCT 540
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 598 GCTGAACATACTCTCACCGCTTACAAAGCTGCTCAGGATATTGCTAATGCTGAATTGGCT 657
Query 541 CCAACGCATCCGATTCGTCTTGGTTTGGCTTTGAACTTCTCTGTGTTTTACTATGAGATT 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 658 CCAACGCATCCGATTCGTCTTGGTTTGGCTTTGAATTTCTCTGTGTTTTACTATGAGATT 717
Query 601 CTTAATTCTCCTGACCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCCATTGCT 660
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTTAATTCTCCAGATCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCCATTGCT 777
Query 661 GAGTTGGATACTCTTGGAGAGGAGTCATACAAGGATAGTACCTTGATCATGCAGCTTCTT 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GAGTTAGATACTCTTGGAGAGGAGTCATACAAGGATAGTACCTTGATCATGCAGCTTCTT 837
Query 721 CGTGACAATCTTACTCTCTGGACTTCTGACATGCAG 756
||||||||||||||||||||||||||||||||||||
Sbjct 838 CGTGACAATCTTACTCTCTGGACTTCTGACATGCAG 873
Score = 159 bits (86), Expect = 3e-38
Identities = 90/92 (98%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 754 CAGGACGAAAGTCCGGAGGAGATCAAAGAAGCAGCAGCACCAAAGCCTGCTGAAGAACAG 813
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 955 CAGGACGAAAGTCCGGAGGAGATTAAAGAAGCAGCAGCACCAAAGCCTGCTGAAGAACAG 1014
Query 814 AAGGAGACCTAAGTTTGTGGTTTCTTTTTTCA 845
||||||| ||||||||||||||||||||||||
Sbjct 1015 AAGGAGATCTAAGTTTGTGGTTTCTTTTTTCA 1046
> AT4G09000.2 | Symbols: GRF1, GF14 CHI | general regulatory factor
1 | chr4:5775210-5777481 FORWARD LENGTH=1458
Length=1458
Score = 863 bits (467), Expect = 0.0
Identities = 652/741 (88%), Gaps = 13/741 (2%)
Strand=Plus/Plus
Query 21 AATGGCGGCACCACCAGCATCATCCTCGGCGAGGGAAGAGTTCGTTTACCTCGCAAAACT 80
|||||| | | |||||| | | ||||| || || || || ||||| ||| | || |||||
Sbjct 177 AATGGC-G-A-CACCAGGAGCTTCCTCAGCAAGAGATGAATTCGTATACATGGCGAAACT 233
Query 81 CGCTGAACAAGCGGAACGTTACGAAGAAATGGTTGAATTCATGGAAAAAGTCGCTG-AAG 139
||| |||||||| || ||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 234 CGCCGAACAAGCAGAGCGTTACGAAGAAATGGTTGAATTCATGGAGAAAGTCGC-GAAAG 292
Query 140 CCGTCGACAAAGACGAACTCACCGTCGAAGAACGTAATCTCCTCTCCGTCGCTTACAAAA 199
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 CTGTTGACAAAGACGAACTCACCGTCGAAGAACGTAATCTCCTCTCCGTCGCTTACAAAA 352
Query 200 ACGTCATCGGCGCTCGTCGTGCTTCCTGGAGAATCATCTCTTCCATTGAACAAAAGGAAG 259
|||||||||| |||||||||||||| ||||||||||| || || || ||||||||||| |
Sbjct 353 ACGTCATCGGAGCTCGTCGTGCTTCGTGGAGAATCATTTCATCGATCGAACAAAAGGAGG 412
Query 260 AGAGTCGTGGTAACGATGACCATGTAACCACGATCCGTGATTACAGAAGCAAGATCGAAT 319
|| ||| |||||||||||||| || | ||||||||| ||||||||||| ||||||
Sbjct 413 AGTCTCGCGGTAACGATGACCACGTTTCGTTGATCCGTGACTACAGAAGCAAAATCGAAA 472
Query 320 CTGAG-TTATC-GAAAATCTGTGACGGTATTCTTAAGCTTCTTGATACTAGACTTGTTCC 377
| || || || || | |||||||||| || ||||||||||| ||||| | || |||||
Sbjct 473 CGGAACTT-TCTGATA-TCTGTGACGGAATCCTTAAGCTTCTCGATACGATTCTCGTTCC 530
Query 378 AGCTTCTGCTAATGGAGATTCGAAGGTTTTTTACCTTAAGATGAAGGGAGATTATCATAG 437
||| ||||| ||||||||||||||| ||||| || |||||||| || |||||||||||
Sbjct 531 CGCTGCTGCTTCTGGAGATTCGAAGGTGTTTTATCTGAAGATGAAAGGTGATTATCATAG 590
Query 438 GTATTTGGCTGAGTTTAAGA-CTGGTCAAGAGAGGAAAGATGCTGCTGAACATACTCTCA 496
||| ||||||||||| || | ||||||||||||||||||||||||||||||||||||| |
Sbjct 591 GTACTTGGCTGAGTTCAA-ATCTGGTCAAGAGAGGAAAGATGCTGCTGAACATACTCTTA 649
Query 497 CCGCTTACAAAGCCGCTCAGGATATTGCTAATTCTGAATTGGCTCCAACGCATCCGATTC 556
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CTGCTTACAAAGCTGCTCAGGATATTGCTAATTCTGAATTGGCTCCAACGCATCCGATTC 709
Query 557 GTCTTGGT-TTGGCTTTGAACTTCTCTGTGTTTTACTATGAGATTCTTAATTCTCCTGAC 615
|||||||| ||| | |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 710 GTCTTGGTCTTG-CGTTGAACTTCTCTGTGTTTTACTATGAGATTCTCAATTCTCCAGAT 768
Query 616 CGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCCATTGCTGAGTTGGATACTCTT 675
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 769 CGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCAATTGCTGAATTGGATACTCTT 828
Query 676 GGAGAGGAGTCATACAAGGATAGTACCTTGATCATGCAGCTTCTTCGTGACAATCTTACT 735
|| || |||||||||||||| ||||| ||||| ||||||||||||||||| || || |||
Sbjct 829 GGTGAAGAGTCATACAAGGACAGTACTTTGATTATGCAGCTTCTTCGTGATAACCTCACT 888
Query 736 CTCTGGACTTCTGACATGCAG 756
|||||||||||||| ||||||
Sbjct 889 CTCTGGACTTCTGATATGCAG 909
> AT1G78300.1 | Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA | general
regulatory factor 2 | chr1:29461671-29463385 FORWARD LENGTH=1325
Length=1325
Score = 632 bits (342), Expect = 1e-180
Identities = 631/770 (82%), Gaps = 22/770 (3%)
Strand=Plus/Plus
Query 55 GAAGAGTTCGTTTACCTCGCAAAACTCGCTGAACAAGCGGA-ACGTTACGAAGAAATGGT 113
||||||||||| ||| | || || ||||| || |||||||| | | |||||||| |||||
Sbjct 228 GAAGAGTTCGTATACATGGCTAAGCTCGCGGAGCAAGCGGAGA-GGTACGAAGAGATGGT 286
Query 114 TGAATTCATGGAAAAAGTCGCTGAAGCCGTCGACAAAGACGAACTCACCGTCGAAGAACG 173
|| || ||||| |||||| | | ||||| || || ||||||||||| ||||| ||
Sbjct 287 AGAGTTTATGGAGAAAGTCTCCGCCGCCGTTGATGGCGATGAACTCACCGTAGAAGAGCG 346
Query 174 TAATCTCCTCTCCGTCGCTTACAAAAACGTCATCGGCGCTCGTCGTGCTTCCTGGAGAAT 233
||||| |||||||||||||| || || || || || ||||| ||||| || ||| | ||
Sbjct 347 AAATCTTCTCTCCGTCGCTTATAAGAATGTGATTGGTGCTCGCCGTGCCTCGTGGCGTAT 406
Query 234 CATCTCTTCCATTGAACAAAAGGAAGAGAGTCGTGGTAACGATGACCATGTAACCACGAT 293
||| || || || || || ||||||||||| ||||||||||||||||| || || ||||
Sbjct 407 CATTTCATCGATCGAGCAGAAGGAAGAGAGCCGTGGTAACGATGACCACGTCACGGCGAT 466
Query 294 CCGTGATTACAGAAG-C-AAGATCGA-ATCTGAGTTAT-CGAAAATCTGTGACGGTATTC 349
|||||| || || | | |||||||| | | || | | || |||||| ||||| || |
Sbjct 467 CCGTGAATATAG--GTCTAAGATCGAGA-CGGAACTCTCCG-GAATCTGCGACGGAATCC 522
Query 350 TTAAGCTT-CTTGA-TACTAGACTTGTTCCAGCTTCTGCTAATGGAGATTCGAAGGTTTT 407
||||| || ||||| | ||||||| | || || ||||| ||| ||||| ||||| ||
Sbjct 523 TTAAG-TTGCTTGACT-CTAGACTCATCCCTGCCGCTGCTTCTGGTGATTCCAAGGTCTT 580
Query 408 TTACCTTAAGATGAAGGGAGATTATCATAGGTATTTGGCTGAGTTTAAGACTGGTCAAGA 467
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 581 TTACCTTAAGATGAAGGGAGATTATCACAGGTACTTGGCTGAGTTTAAGACTGGTCAAGA 640
Query 468 GAGGAAAGATGCTGCTGAACATACTCTCACCGCTTACAAAGCCGCTCAGGATATTGCTAA 527
||||||||| || || |||||||| ||| ||||||||||| | |||||||||||||||||
Sbjct 641 GAGGAAAGACGCCGCCGAACATACACTCGCCGCTTACAAATCTGCTCAGGATATTGCTAA 700
Query 528 TTCTGAA-TTGGCTCCAACGCATCCGATTCGTCTTGGT-TTGGCTTTGAACTTCTCTGTG 585
| | || ||| ||||||| || || |||||||||||| ||| | |||||||||||||||
Sbjct 701 TGCAGAGCTTG-CTCCAACACACCCAATTCGTCTTGGTCTTG-CATTGAACTTCTCTGTG 758
Query 586 TTTTACTATGAGATTCTTAATTCTCCTGACCGTGCTTGTAATCTCGCTAAGCAGGCGTTT 645
|| || || ||||| || ||||||||||| ||||| ||||| ||||| || ||||| |||
Sbjct 759 TTCTATTACGAGATCCTCAATTCTCCTGATCGTGCCTGTAACCTCGCCAAACAGGCCTTT 818
Query 646 GATGAAGCCATTGCTGAGTTGGATACTCTTGGAGAGGAGTCATACAAGGATAGTACCTTG 705
||||| || ||||| |||||||| |||||||| || ||||||||||| || |||||||||
Sbjct 819 GATGAGGCGATTGCAGAGTTGGACACTCTTGGTGAAGAGTCATACAAAGACAGTACCTTG 878
Query 706 ATCATGCAGCTTCTTCGTGACAATCTTACTCTCTGGACTTCTGACATGCAGGACGAAAG- 764
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| || |
Sbjct 879 ATCATGCAGCTTCTTCGTGACAATCTCACTCTCTGGACATCTGATATGCAGGATGAT-GC 937
Query 765 TCCGGAGGAGATCAAAGAAGCAGCAGCACCAAAGCCTG-CTGAAGAACAG 813
| |||| |||||||| ||||||||||| ||||| || | | || ||||||
Sbjct 938 TGCGGATGAGATCAAGGAAGCAGCAGCGCCAAAACC-GACCGAGGAACAG 986
> AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor
3 | chr5:15409697-15411516 FORWARD LENGTH=1141
Length=1141
Score = 388 bits (210), Expect = 3e-107
Identities = 560/724 (77%), Gaps = 44/724 (6%)
Strand=Plus/Plus
Query 52 AGGGAAGAG-TTCGTTTACCTCGCAAAACTCGCTGAACAAGCGGAACGTTACGAAGAAAT 110
||||||||| | |||||| | || ||| | || |||||||| |||||||||||||||||
Sbjct 152 AGGGAAGAGAAT-GTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTACGAAGAAAT 210
Query 111 GGTTGAATTCATGGAAAAAGTCGCTGAAGCC-GTCGACAAAGACGAACTCACCGTCGAAG 169
||||||||||||||| ||||| || ||| | || || || ||||| | || ||||
Sbjct 211 GGTTGAATTCATGGAGAAAGTTGC-GAAAACTGTTGATGTTGAGGAACTTTCAGTTGAAG 269
Query 170 A-ACGTAATCTCCTCTCCGTCGCTTACAAAAACGTCATCGGCGCTCGTCGTGCTTCCTGG 228
| | | ||||| ||||| || |||||||| ||||| || || || | | ||||| |||
Sbjct 270 AGAGG-AATCTTCTCTCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTGG 328
Query 229 AGAATCATCTCTTCCATTGAACA-AAAGGAAGAGAGTCGT-GGTAACGATGACCATGTAA 286
|||||||| ||||| ||||| || |||| ||||||| | || ||||| || |||||
Sbjct 329 AGAATCATTTCTTCGATTGAGCAGAAAG-AAGAGAG-CAAAGGGAACGAAGATCATGTTG 386
Query 287 CCACGATCC-GTGATTACAGAAGCAAGATCGAATCTGAG-TTATCGAAAATCTGTGACGG 344
| | ||| | ||||||||| | ||||| ||||| ||| ||| | ||||||||||| ||
Sbjct 387 CTATTATCAAG-GATTACAGAGGAAAGATTGAATCCGAGCTTAGC-AAAATCTGTGATGG 444
Query 345 TATTCTT-AA-GCTTCTTGATA-CT-AGACTTGTTCCAGCTTCTGCTA-ATG-GA-GATT 397
||| || || | ||||||| | || | ||| |||| ||||||| | | || |
Sbjct 445 GATT-TTGAATG-TTCTTGA-AGCTCAT-CTTATTCC---TTCTGCTTCACCAGCTGAAT 497
Query 398 CGAAGGTTTTTTACCTTAAGATGAAGGGAGATTATCATAGGTAT-TTGGCTGAGTTTAAG 456
| || || ||||| |||||||||||||| ||||||||||||||| ||| |||||||||||
Sbjct 498 CTAAAGTGTTTTATCTTAAGATGAAGGGTGATTATCATAGGTATCTTG-CTGAGTTTAAG 556
Query 457 ACTGGT-CAAGAGAGGAAAGATGCTGCTGAACAT-ACTCTCACCGCTTACAAAGCC-GCT 513
||||| | || |||||||| ||||||||| | ||| | |||||||| | | |||
Sbjct 557 GCTGGTGCT-GAAAGGAAAGAAGCTGCTGAA-AGCACTTTGGTTGCTTACAA-GTCTGCT 613
Query 514 -CAGGATATTGCTAATTCTGAATTGGCTCCAACGCATCCGATTCGTCTTGGT-TTGGCTT 571
| | | ||||| | | |||| || ||||| || || ||||| | |||||| ||| |
Sbjct 614 TCCG-ACATTGCCACTGCTGAGTTAGCTCCTACTCACCCGATAAGGCTTGGTCTTG-CAC 671
Query 572 TGAACTTCTCTGTGTTTTACTATGAGATTCTTAATTCTCCTGACCGTGCTTGTAATCTCG 631
| ||||||||||||||||||||||| || || || || ||||| |||||||| | ||||
Sbjct 672 TCAACTTCTCTGTGTTTTACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCG 731
Query 632 CTAAGCAGGCGTTTGATGAAGCCATTGCTGAGTTGGATACTCTTGGA-GAGGAGTCATAC 690
| ||||||||||||||||| || || |||||||| ||||| |||| ||||| ||||||
Sbjct 732 CAAAGCAGGCGTTTGATGATGCAATCGCTGAGTTAGATACA-TTGGGTGAGGAATCATAC 790
Query 691 AAGGATAGTAC-CTTGATCATGCAGCTTCTTCGTGACAATCTTACTCTCTGGACTTCTGA 749
||||| ||||| || ||| |||||||||||| | |||||||| |||||||||||||| ||
Sbjct 791 AAGGACAGTACACT-GATTATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGA 849
Query 750 CATG 753
|||
Sbjct 850 TATG 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41192000540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5