BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922663

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G35183.1 | Symbols:  | unknown protein; Has 5 Blast hits to ...   113    1e-24


> AT1G35183.1 | Symbols:  | unknown protein; Has 5 Blast hits to 
5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr1:12884438-12884590 FORWARD LENGTH=153
Length=153

 Score =  113 bits (61),  Expect = 1e-24
 Identities = 104/123 (85%), Gaps = 10/123 (8%)
 Strand=Plus/Plus

Query  238  TGGAAAGAAACAACTT-ATTTCCG-GAACGAT-ATGATGAGGAGACGA-GATCAGAACAA  293
            ||||||| |||||||| | || || |||| || | | |||||| || | ||||| | | |
Sbjct  2    TGGAAAGTAACAACTTCA-TT-CGTGAAC-ATGACGTTGAGGACAC-AGGATCATATC-A  56

Query  294  GG-AGAGTCGGAGACGGAATCTGAGAGTTCTGACGATGAGGAGACAGAATCCGATAATTT  352
            || |||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct  57   GGAAGAGTCGGAGACGGAATCTGAGAGTTCTGAAGATGAGGAGACAGAATCCGATGATAT  116

Query  353  GGA  355
            |||
Sbjct  117  GGA  119



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19855760855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5