BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922666
Length=530
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 784 0.0
> AT1G35210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures;
EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF740 (InterPro:IPR008004);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G22470.1); Has 83 Blast hits to 83 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink). | chr1:12896652-12897402 REVERSE LENGTH=751
Length=751
Score = 784 bits (424), Expect = 0.0
Identities = 498/532 (94%), Gaps = 11/532 (2%)
Strand=Plus/Plus
Query 4 ACTCAAATAGATGAAGAGATGGCGAGCTTAAGCACGAGCTTGCACGGAATAAGACGAGGG 63
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ACTCAAATAGATGAAGAAATGGCGAGCTTAAGCACGAGCTTGCTCGGAATAAGACGAGGG 60
Query 64 TCAAGTAACAAGAATAAGGCAGAAGATAAGACCAAAAACGCAGTGTTTTGCAAGAAGCAT 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAAGTAACAAGAACAAGGCAGAAGATAAGACCAAAAACGCAGTGTTTTGCAAGAAGCAT 120
Query 124 CCAAAGCATAGACAATCACCTGGTGTTTGTTCTCTTTGTCTTAACGAGAGGCTCTCTCTT 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAAAGCATAGACAATCACCTGGTGTTTGTTCTCTTTGTCTTAACGAGAGGCTCTCTCTT 180
Query 184 TTTATCAAAGCAGCTTCTTCACGTAGACCAAGATCTCGTCAAAtcttgtgttcttcttcc 243
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 181 TTTATCAAAGCAGCTTCTTCACGTAGACCAAGATCTCGTCAAATCTTGTCTACTTCTTCC 240
Query 244 tcaactacttcctctctttcttcttatggttcttcttctgtgtcttcttgtccttctcct 303
|||||||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||
Sbjct 241 TCAACTACTTCCTCTCTTTCATCTGACGGTTCTTCTTCTGTCTCTTCTTGTCCTTCTCCT 300
Query 304 cttGTTGAACGCCGAAGATACTTGGTAGTGTCCGGAGGCAGCGGTAGAGGAGAGAAAGTG 363
||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 301 ATTGTTGATCGCCGACGATACTTGTTAATGTCCGGAGGCAGCGGTAGAGGAGAGAAAGTG 360
Query 364 ATTTCGTGGATGACGAAAAGCCGATCTGTAGCTTATAAAGTGGATGATGagaaaagaaag 423
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 361 ATTTCGTGGATGACGAAAAGCCGATCCGTAGCTTATAAAGTGGATGATGAGAAAAGAA-G 419
Query 424 aagaagaagaagaagacaaagacgaaaagTGGTTTCTTTTTTAGTTTTGTAATGGGCTCA 483
||||||||||| |||||||||| ||||||||||||||| |||| ||||||||| ||
Sbjct 420 --GAAGAAGAAGA---CAAAGACGAATAGTGGTTTCTTTTTTGGTTTGGTAATGGGCACA 474
Query 484 A-GAAGGGACGATAAGAGAGT--GT-T-GTAGATTCGTTAGATTAGATTGTT 530
| |||| ||| |||||| ||| || | ||||||| ||||||||||||||||
Sbjct 475 AAGAAGAGACAATAAGATAGTCAGTCTTGTAGATTTGTTAGATTAGATTGTT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25368244235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5