BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922666 Length=530 Score E Sequences producing significant alignments: (Bits) Value AT1G35210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 784 0.0 > AT1G35210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22470.1); Has 83 Blast hits to 83 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:12896652-12897402 REVERSE LENGTH=751 Length=751 Score = 784 bits (424), Expect = 0.0 Identities = 498/532 (94%), Gaps = 11/532 (2%) Strand=Plus/Plus Query 4 ACTCAAATAGATGAAGAGATGGCGAGCTTAAGCACGAGCTTGCACGGAATAAGACGAGGG 63 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 ACTCAAATAGATGAAGAAATGGCGAGCTTAAGCACGAGCTTGCTCGGAATAAGACGAGGG 60 Query 64 TCAAGTAACAAGAATAAGGCAGAAGATAAGACCAAAAACGCAGTGTTTTGCAAGAAGCAT 123 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCAAGTAACAAGAACAAGGCAGAAGATAAGACCAAAAACGCAGTGTTTTGCAAGAAGCAT 120 Query 124 CCAAAGCATAGACAATCACCTGGTGTTTGTTCTCTTTGTCTTAACGAGAGGCTCTCTCTT 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCAAAGCATAGACAATCACCTGGTGTTTGTTCTCTTTGTCTTAACGAGAGGCTCTCTCTT 180 Query 184 TTTATCAAAGCAGCTTCTTCACGTAGACCAAGATCTCGTCAAAtcttgtgttcttcttcc 243 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 181 TTTATCAAAGCAGCTTCTTCACGTAGACCAAGATCTCGTCAAATCTTGTCTACTTCTTCC 240 Query 244 tcaactacttcctctctttcttcttatggttcttcttctgtgtcttcttgtccttctcct 303 |||||||||||||||||||| ||| | |||||||||||||| |||||||||||||||||| Sbjct 241 TCAACTACTTCCTCTCTTTCATCTGACGGTTCTTCTTCTGTCTCTTCTTGTCCTTCTCCT 300 Query 304 cttGTTGAACGCCGAAGATACTTGGTAGTGTCCGGAGGCAGCGGTAGAGGAGAGAAAGTG 363 ||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||| Sbjct 301 ATTGTTGATCGCCGACGATACTTGTTAATGTCCGGAGGCAGCGGTAGAGGAGAGAAAGTG 360 Query 364 ATTTCGTGGATGACGAAAAGCCGATCTGTAGCTTATAAAGTGGATGATGagaaaagaaag 423 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 361 ATTTCGTGGATGACGAAAAGCCGATCCGTAGCTTATAAAGTGGATGATGAGAAAAGAA-G 419 Query 424 aagaagaagaagaagacaaagacgaaaagTGGTTTCTTTTTTAGTTTTGTAATGGGCTCA 483 ||||||||||| |||||||||| ||||||||||||||| |||| ||||||||| || Sbjct 420 --GAAGAAGAAGA---CAAAGACGAATAGTGGTTTCTTTTTTGGTTTGGTAATGGGCACA 474 Query 484 A-GAAGGGACGATAAGAGAGT--GT-T-GTAGATTCGTTAGATTAGATTGTT 530 | |||| ||| |||||| ||| || | ||||||| |||||||||||||||| Sbjct 475 AAGAAGAGACAATAAGATAGTCAGTCTTGTAGATTTGTTAGATTAGATTGTT 526 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25368244235 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5