BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922673
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35290.1 | Symbols: | Thioesterase superfamily protein | ch... 638 0.0
AT1G35250.1 | Symbols: | Thioesterase superfamily protein | ch... 516 1e-145
AT1G68260.1 | Symbols: | Thioesterase superfamily protein | ch... 398 4e-110
> AT1G35290.1 | Symbols: | Thioesterase superfamily protein |
chr1:12947544-12948841 REVERSE LENGTH=849
Length=849
Score = 638 bits (345), Expect = 0.0
Identities = 540/628 (86%), Gaps = 38/628 (6%)
Strand=Plus/Plus
Query 8 CACTCGAAGAAGTGTAATGTTTCAAGCT-GCGGCCACGGCGGCTCAGGCTATGCCTGTGC 66
|||||||||||||| |||| || ||||| ||| ||| | ||||| ||||| ||
Sbjct 48 CACTCGAAGAAGTGCAATGCTTAAAGCTACCGG-CACAGTGGCTCCGGCTA------TG- 99
Query 67 AACACGTGGGGTTTCCCCGTTTTTTGAGTCGACAACTTGTCCTGCCTCTCCGAAGCGCAA 126
||||||| ||||||| |||||| |||||||| ||| |||| |||||||| ||| |||
Sbjct 100 --CACGTGGTGTTTCCCTGTTTTTCGAGTCGACCGCTTATCCTACCTCTCCGGAGCACAA 157
Query 127 AGACCTTCAAACCTCTGGCATGTCTCAAACTG--A-GAGTCAAAGGAGTGAATGGACTCC 183
|||||||||||||||| ||||| |||||| | | ||| ||||||| |||||||| |||
Sbjct 158 AGACCTTCAAACCTCTCTCATGTTTCAAACAGCAAGGAGGCAAAGGAATGAATGGAGTCC 217
Query 184 ATGAGATTGAACTCAAAGTTCGCGATTATGAATTAGACCAATTTGGTGTTGAGAACAATG 243
||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 218 ATGAGATTGAACTTAAAGTTCGTGATTATGAATTAGACCAATTTGGTGTTGTGAACAACG 277
Query 244 CTGTTTATGCAAACTACTGCCAACACGGTCAACACGAGTTTATGAAGAGTATCGGTATCA 303
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 278 CTGTTTATGCAAACTACTGCCAACACGGTCAACACGAGTTTATGGAGACTATCGGTATCA 337
Query 304 ACTGTGATGAAGTATCCCGTTCTGGTGAAGCCTTGGCAGTTTCTGAGTTGACAATAAAGT 363
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 338 ACTGTGATGAAGTGTCCCGTTCTGGTGAAGCATTGGCAGTTTCTGAATTGACAATAAAGT 397
Query 364 TTCTTGCACCTTTACGAAGTGGATGCAAGTTTGTGGTGAAAACGAGGATATCGGGGACAT 423
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 TTCTTGCACCTTTACGTAGTGGATGCAAGTTTGTGGTGAAAACGAGGATATCGGGGACAT 457
Query 424 CCGTGGCGCGCATTTACTATGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTT 483
| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 458 CTATGACGCGCATTTACTTTGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTT 517
Query 484 TGGAGGCAAAAGGAACGGTTGTGTGG-TTG--------T----TC--GT----ATCCCGT 524
||||||||||||||| || ||||||| ||| | || || |||||||
Sbjct 518 TGGAGGCAAAAGGAATGGCTGTGTGGCTTGACAAGAGGTACCGTCCTGTTTGTATCCCGT 577
Query 525 CTTACATACGCTTTAAGTTCAGTCACTTCCAACGCCAACATGTTTTTGATTGATCATGCA 584
|||||||||||| ||| ||| ||||||||||||| ||||| ||| | || | || || |
Sbjct 578 CTTACATACGCTCTAATTTCGGTCACTTCCAACGTCAACACGTTGTCGAAT-AT--TG-A 633
Query 585 CTCTTGGGCTCGACAAAACATTTTTTAT 612
||| ||||||||||||| |||| ||||
Sbjct 634 -TCTAGGGCTCGACAAAATATTTGTTAT 660
> AT1G35250.1 | Symbols: | Thioesterase superfamily protein |
chr1:12932941-12934479 REVERSE LENGTH=686
Length=686
Score = 516 bits (279), Expect = 1e-145
Identities = 389/442 (88%), Gaps = 8/442 (2%)
Strand=Plus/Plus
Query 77 GTTTCCCCGTTTTTTGAGTCGACAACTTGTCCTGCCTCTCCGAAGCGCAAAGACCTTCAA 136
||||||||||| || ||| ||| | ||||||||||||||| || ||||| | ||||||
Sbjct 59 GTTTCCCCGTTCTTGGAGGCGAGGGCATGTCCTGCCTCTCCGGAGTGCAAAAATCTTCAA 118
Query 137 ACCTCTGGCATGTCTCAAACT--GA-G-AGTCAAAGG-AGTGAATGGACTCCATGAGATT 191
|| || ||||||||| |||| || | || || ||| | || ||| |||||||||||
Sbjct 119 GCCCCTCGCATGTCTCGAACTCAGAGGAAG-CACAGGAATTG-GTGGGTTCCATGAGATT 176
Query 192 GAACTCAAAGTTCGCGATTATGAATTAGACCAATTTGGTGTTGAGAACAATGCTGTTTAT 251
||||| |||||||| ||||||||||| || || |||||||||| |||||||||||||||
Sbjct 177 GAACTTAAAGTTCGTGATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTAC 236
Query 252 GCAAACTACTGCCAACACGGTCAACACGAGTTTATGAAGAGTATCGGTATCAACTGTGAT 311
|||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||
Sbjct 237 GCAAACTACTGCCAACACGGTCGACACGAGTTTATGGATAGTATCGGTATCAACTGTAAT 296
Query 312 GAAGTATCCCGTTCTGGTGAAGCCTTGGCAGTTTCTGAGTTGACAATAAAGTTTCTTGCA 371
||||||||||||||||||| |||||||||| || ||||||| ||||||||||| ||||||
Sbjct 297 GAAGTATCCCGTTCTGGTGGAGCCTTGGCAATTCCTGAGTTAACAATAAAGTTCCTTGCA 356
Query 372 CCTTTACGAAGTGGATGCAAGTTTGTGGTGAAAACGAGGATATCGGGGACATCCGTGGCG 431
|||||||| |||||||| | ||||||||||||||||||||||||||||| ||| ||| |
Sbjct 357 CCTTTACGTAGTGGATGTAGGTTTGTGGTGAAAACGAGGATATCGGGGATATCTTTGGTG 416
Query 432 CGCATTTACTATGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCA 491
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CGCATTTACTTTGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCA 476
Query 492 AAAGGAACGGTTGTGTGG-TTG 512
|||||||||| ||||||| |||
Sbjct 477 AAAGGAACGGCTGTGTGGCTTG 498
> AT1G68260.1 | Symbols: | Thioesterase superfamily protein |
chr1:25585776-25587658 REVERSE LENGTH=830
Length=830
Score = 398 bits (215), Expect = 4e-110
Identities = 360/428 (84%), Gaps = 17/428 (4%)
Strand=Plus/Plus
Query 92 GAGTCGACAACTT-GTCCTGCCTCTCCGAAGCGCAAAGACCTTCAAACCTCTGGCATGTC 150
||| |||| |||| || | |||||||| |||| ||| |||||||| ||||| |||| ||
Sbjct 123 GAGACGACCACTTAGT-ATTCCTCTCCGGAGCGTAAAAACCTTCAAGCCTCTAGCAT-TC 180
Query 151 -TCAAACT--GA-GAGTCAAAGGAGTGAATGGA-CTCCATGAGATTGAACTCAAAGTTCG 205
|| | || | ||| ||||||| ||| | || |||||||| ||||||||||||||||
Sbjct 181 TTCGATCTCAAAGGAGGCAAAGGAATGAGT-GAGTTCCATGAGGTTGAACTCAAAGTTCG 239
Query 206 CGATTATGAATTAGACCAATTTGGTGTTGAGAACAATGCTGTTTATGCAAACTACTGCCA 265
||||||||||| || || |||||||||| ||||||||||||||| ||||||||||| ||
Sbjct 240 TGATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCA 299
Query 266 ACACGGTCAACACGAGTTTATGA-AGAGTATCGGTATCAACTGTGATGAAGTATCCCGTT 324
|||||||| ||| |||||| | | ||||||||||||||||||| || |||||| | ||||
Sbjct 300 ACACGGTCGACATGAGTTTCT-AGAGAGTATCGGTATCAACTGCGACGAAGTAGCACGTT 358
Query 325 CTGGTGAAGCCTTGGCAGTTTCTGAGTTGACAATAAAGTTTCTTGCACCTTTACGAAGTG 384
|||| |||||||| ||| |||| ||||||||||| ||||| ||| |||||||||| || |
Sbjct 359 CTGGGGAAGCCTTAGCAATTTCAGAGTTGACAATGAAGTTCCTTTCACCTTTACGTAGCG 418
Query 385 GATG-CAAGTTTGTGGTGAAAACGAGGATATCGGGGACATCCG-TGGCGCGCATTTACTA 442
|| | ||| || ||||||||| ||||||||||||||||||| | | ||||| |||||||
Sbjct 419 GA-GACAAATTCGTGGTGAAAGCGAGGATATCGGGGACATCTGCT-GCGCGTATTTACT- 475
Query 443 T-GAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCAAAAGGAACGG 501
| || || |||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 476 TCGATCATTTCATCTTTAAACTTCCAAATCAAGAGCCTATATTGGAGGCAAAAGGAATAG 535
Query 502 TTGTGTGG 509
|||||||
Sbjct 536 CTGTGTGG 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5